debbiemarkslab / NEMO
Learning protein structure with a differentiable simulator
☆27Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for NEMO
- Energy-based models for atomic-resolution protein conformations☆95Updated 2 years ago
- parameterizing valid Euclidean distance matrices (EDMs) via neural networks☆19Updated 5 years ago
- ☆62Updated 5 years ago
- The official implementation of Energy-Inspired Molecular Conformation Optimization (ICLR 2022)☆36Updated 2 years ago
- Code for Fold2Seq paper from ICML 2021☆49Updated 2 years ago
- PyTorch library of layers acting on protein representations☆117Updated 4 months ago
- AmoebaContact is a program for multi-cutoff protein contact prediction which starts from target sequence alone. Different from traditiona…☆9Updated 4 years ago
- Massively-Parallel Natural Extension of Reference Frame☆30Updated last year
- ☆67Updated 2 years ago
- Protein quality assessment using Graph Convolutional Networks☆28Updated 2 years ago
- ☆35Updated 5 years ago
- ☆81Updated last year
- Database of Interacting Protein Structures (DIPS)☆95Updated 9 months ago
- Generative model for molecular distance geometry☆39Updated last year
- ☆49Updated 5 months ago
- GraphNVP: An Invertible Flow Model for Generating Molecular Graphs☆91Updated 2 years ago
- Codebase for Cormorant Neural Networks☆60Updated 2 years ago
- ☆85Updated 2 years ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆49Updated 2 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆49Updated 11 months ago
- Molecular-GAT☆21Updated 6 years ago
- Code for the ICML 2019 paper 'Conditioning by adaptive sampling for robust design'☆34Updated 3 years ago
- Deep convolutional networks for fold recognition☆22Updated 5 years ago
- ☆68Updated 2 years ago
- An experimental repo for experimenting with PyTorch models☆35Updated last year
- Code for "Biological Sequence Design with GFlowNets", 2022☆72Updated last year
- Learning Neural Generative Dynamics for Molecular Conformation Generation (ICLR 2021)☆22Updated 3 years ago
- Recurrent Geometric Network in Pytorch☆29Updated 4 years ago
- Learning Neural Generative Dynamics for Molecular Conformation Generation (ICLR 2021)☆45Updated 3 years ago