biolib / openproteinLinks
A PyTorch framework for prediction of tertiary protein structure
☆189Updated 4 years ago
Alternatives and similar repositories for openprotein
Users that are interested in openprotein are comparing it to the libraries listed below
Sorting:
- PyTorch library of layers acting on protein representations☆119Updated last year
- An all-atom protein structure dataset for machine learning.☆355Updated last year
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆121Updated 4 years ago
- Recurrent Geometric Networks for end-to-end differentiable learning of protein structure☆325Updated 6 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Updated 4 years ago
- ☆190Updated 3 years ago
- Fitness landscape exploration sandbox for biological sequence design.☆168Updated 2 years ago
- Reimplementation of the UniRep protein featurization model.☆108Updated last year
- ☆127Updated 4 years ago
- trRosetta for protein design☆183Updated 4 years ago
- Predicting protein structure through sequence modeling☆112Updated 5 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆90Updated 2 years ago
- Protein function prediction using a variational autoencoder☆95Updated 7 years ago
- UniRep model, usage, and examples.☆357Updated 3 years ago
- pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/☆28Updated last year
- Recurrent Geometric Network in Pytorch☆28Updated 5 years ago
- An implementation of the DeepMind's AlphaFold based on PyTorch for research☆400Updated 4 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆98Updated 3 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆110Updated last year
- A generative latent variable model for biological sequence families.☆241Updated 3 years ago
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆303Updated 5 months ago
- Attempt at reproduction of AlphaFold2☆98Updated last year
- Protein-compound affinity prediction through unified RNN-CNN☆149Updated last year
- ATOM3D: tasks on molecules in three dimensions☆313Updated 2 years ago
- Energy-based models for atomic-resolution protein conformations☆100Updated 3 years ago
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆106Updated last month
- ☆81Updated 2 years ago
- Paratope Prediction using Deep Learning☆61Updated 2 years ago
- Database of Interacting Protein Structures (DIPS)☆102Updated last year
- DeeplyTough: Learning Structural Comparison of Protein Binding Sites☆166Updated 2 years ago