biolib / openproteinLinks
A PyTorch framework for prediction of tertiary protein structure
☆189Updated 4 years ago
Alternatives and similar repositories for openprotein
Users that are interested in openprotein are comparing it to the libraries listed below
Sorting:
- PyTorch library of layers acting on protein representations☆119Updated last year
- An all-atom protein structure dataset for machine learning.☆355Updated last year
- Recurrent Geometric Networks for end-to-end differentiable learning of protein structure☆325Updated 6 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆120Updated 4 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆261Updated 4 years ago
- ☆190Updated 3 years ago
- Predicting protein structure through sequence modeling☆112Updated 5 years ago
- Reimplementation of the UniRep protein featurization model.☆107Updated last year
- trRosetta for protein design☆182Updated 4 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆88Updated 2 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆98Updated 3 years ago
- A package to predict protein inter-residue geometries from sequence data☆217Updated 3 years ago
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆246Updated last year
- Fitness landscape exploration sandbox for biological sequence design.☆166Updated 2 years ago
- Recurrent Geometric Network in Pytorch☆28Updated 4 years ago
- UniRep model, usage, and examples.☆355Updated 3 years ago
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆301Updated 4 months ago
- An implementation of the DeepMind's AlphaFold based on PyTorch for research☆399Updated 4 years ago
- Literature of deep learning for graphs in Chemistry and Biology☆201Updated 4 years ago
- ☆221Updated 2 years ago
- The official implementation of the Molecule Attention Transformer.☆249Updated 5 years ago
- ☆127Updated 4 years ago
- ☆81Updated last year
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆105Updated 2 years ago
- Energy-based models for atomic-resolution protein conformations☆99Updated 3 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Updated 5 years ago
- ATOM3D: tasks on molecules in three dimensions☆312Updated 2 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆110Updated last year
- A generative latent variable model for biological sequence families.☆236Updated 3 years ago
- Attempt at reproduction of AlphaFold2☆97Updated 10 months ago