A PyTorch framework for prediction of tertiary protein structure
☆192Jun 8, 2021Updated 5 years ago
Alternatives and similar repositories for openprotein
Users that are interested in openprotein are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Recurrent Geometric Networks for end-to-end differentiable learning of protein structure☆324Aug 1, 2019Updated 6 years ago
- Standardized data set for machine learning of protein structure☆917Nov 18, 2020Updated 5 years ago
- Learning protein structure with a differentiable simulator☆27Jul 8, 2019Updated 7 years ago
- Recurrent Geometric Network in Pytorch☆28Oct 14, 2020Updated 5 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆27May 9, 2022Updated 4 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆121Aug 7, 2021Updated 4 years ago
- PyTorch library of layers acting on protein representations☆119Jun 30, 2024Updated 2 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 7 years ago
- Implementation of Accurate Protein Structure Prediction by Embeddings and Deep Learning Representations☆23Feb 20, 2020Updated 6 years ago
- ProSPr: Protein Structure Prediction☆416Oct 6, 2022Updated 3 years ago
- A fork of Autodock Vina for DeltaVina scoring function☆10Nov 7, 2016Updated 9 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 4 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An all-atom protein structure dataset for machine learning.☆364Mar 16, 2024Updated 2 years ago
- Deep convolutional networks for fold recognition☆22Nov 8, 2019Updated 6 years ago
- Energy-based models for atomic-resolution protein conformations☆105Mar 22, 2022Updated 4 years ago
- Listing of papers about machine learning for proteins.☆1,712May 31, 2024Updated 2 years ago
- Deep ResNet-based protein contact prediction☆19Mar 30, 2020Updated 6 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆739Dec 11, 2022Updated 3 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated last year
- MiniFold: Deep Learning for Protein Structure Prediction inspired by DeepMind AlphaFold algorithm☆219Mar 25, 2021Updated 5 years ago
- UniRep model, usage, and examples.☆366Mar 1, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503☆580Apr 3, 2026Updated 3 months ago
- PyTorch implementations of protein secondary structure prediction on CB513.☆17Dec 30, 2018Updated 7 years ago
- To be a next-generation DL-based phenotype prediction from genome mutations.☆19May 17, 2021Updated 5 years ago
- Protein Interface Prediction using Graph Convolutional Networks☆93Oct 2, 2020Updated 5 years ago
- Predicting protein structure through sequence modeling☆112May 4, 2020Updated 6 years ago
- ☆18Nov 24, 2019Updated 6 years ago
- Remote protein homology detection suite.☆627Aug 12, 2025Updated 11 months ago
- Reimplementation of the UniRep protein featurization model.☆107Sep 3, 2024Updated last year
- DeepContact Software☆26Jun 16, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆59Sep 30, 2022Updated 3 years ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆49Jan 24, 2022Updated 4 years ago
- Graph Learning of INTER-protein contacts☆10Feb 20, 2022Updated 4 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36May 30, 2021Updated 5 years ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19May 6, 2019Updated 7 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Sep 13, 2020Updated 5 years ago
- DeeplyTough: Learning Structural Comparison of Protein Binding Sites☆167Apr 7, 2023Updated 3 years ago