Python bindings for the TM-align algorithm and code for protein structure comparison developed by Zhang et al.
☆68Aug 20, 2026Updated 2 weeks ago
Alternatives and similar repositories for tmtools
Users that are interested in tmtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated 2 years ago
- Python implementation of the TMscore program☆43Apr 29, 2024Updated 2 years ago
- Automated construction of protein chimeras and their analysis.☆15Sep 29, 2023Updated 2 years ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆425Feb 26, 2026Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- ☆31Oct 20, 2023Updated 2 years ago
- Generative Pretrained Autoregressive Transformer Graph Neural Network applied to the Analysis and Discovery of Materials☆16Aug 9, 2023Updated 3 years ago
- Inpainting protein sequence and structure☆13Nov 10, 2023Updated 2 years ago
- An antibody-specific language model focusing on NGL prediction☆45Aug 22, 2024Updated 2 years ago
- ☆51Sep 25, 2024Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆100Jun 11, 2025Updated last year
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- ☆41Mar 25, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Extension of ThermoMPNN for double mutant predictions☆66Mar 23, 2026Updated 5 months ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- ☆10Mar 10, 2023Updated 3 years ago
- Diffusion-based all-atom protein generative model.☆239Aug 27, 2025Updated last year
- Official code release for Ambient Protein Diffusion☆35Aug 30, 2025Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆279Apr 27, 2025Updated last year
- ☆15Apr 3, 2025Updated last year
- ☆52Mar 30, 2026Updated 5 months ago
- ☆121Dec 7, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Fast and Interpretable Protein Substructure Alignment via Optimal Transport (ICLR 2026)☆27Jun 26, 2026Updated 2 months ago
- DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…☆13Sep 20, 2022Updated 3 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆41Jul 9, 2023Updated 3 years ago
- Graphical Representation of Ancestral Sequence Predictions☆14Mar 6, 2023Updated 3 years ago
- ☆18May 11, 2026Updated 3 months ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 3 years ago
- ☆143Aug 8, 2024Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆332Oct 28, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,287Aug 24, 2026Updated 2 weeks ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆113May 25, 2025Updated last year
- Context Parallelism Code for Boltz-2☆55Jul 16, 2026Updated last month
- Kuhlman Lab Installation of AlphaFold3☆42Mar 26, 2026Updated 5 months ago
- ☆43Jul 28, 2025Updated last year
- Metrics to evaluate distributional coverage of generative models of protein structures.☆21Aug 13, 2025Updated last year
- ☆74Feb 13, 2026Updated 6 months ago