Alternatives and similar repositories for tmtools

Users that are interested in tmtools are comparing it to the libraries listed below

• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆40Updated last month
• liuyf020419 / SCUBA-D
  ☆60Updated last year
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆77Updated last year
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆66Updated 10 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆58Updated 5 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆107Updated 4 months ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆42Updated last year
• Kuhlman-Lab / evopro
  ☆81Updated last week
• robpearc / DeepFoldRNA
  ☆35Updated last year
• bene837 / af2seq
  ☆43Updated 9 months ago
• maranasgroup / CatPred
  Machine Learning models for in vitro enzyme kinetic parameter prediction
  ☆49Updated 2 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆49Updated last month
• yehlincho / BoltzDesign1
  ☆159Updated 2 weeks ago
• regeneron-mpds / propermab
  ☆27Updated 2 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆38Updated 6 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆62Updated 4 months ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆64Updated 3 years ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆42Updated 7 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆48Updated 2 years ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆109Updated 5 months ago
• ELELAB / RosettaDDGPrediction
  ☆67Updated 4 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆56Updated 6 months ago
• hefeda / PGP
  ☆39Updated last month
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆95Updated last year
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆57Updated last year
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆31Updated 2 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆114Updated 3 months ago
• AbSciBio / igdesign
  ☆41Updated 5 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago