Alternatives and similar repositories for tmtools

Users that are interested in tmtools are comparing it to the libraries listed below

• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆97Updated 2 years ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆119Updated 7 months ago
• dahjan / DMS_opt
  ☆72Updated 5 years ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆123Updated 2 weeks ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆70Updated 4 years ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆51Updated 3 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆74Updated last month
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆89Updated last month
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆94Updated 4 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆128Updated 6 months ago
• liuyf020419 / SCUBA-D
  ☆62Updated last year
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆82Updated last year
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆146Updated 2 years ago
• Kuhlman-Lab / evopro
  ☆88Updated 2 weeks ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆124Updated 4 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆163Updated 3 weeks ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆66Updated 3 months ago
• levinthal / Pallatom
  ☆121Updated 4 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆58Updated 2 weeks ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆140Updated 2 months ago
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆73Updated 4 years ago
• ELELAB / RosettaDDGPrediction
  ☆78Updated 8 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆70Updated this week
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆71Updated 4 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆68Updated 3 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆83Updated 3 months ago
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆148Updated last week
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆58Updated last month
• zhanghaicang / carbonmatrix_public
  ☆116Updated 4 months ago