Python bindings for the TM-align algorithm and code for protein structure comparison developed by Zhang et al.
☆66Nov 9, 2025Updated 3 months ago
Alternatives and similar repositories for tmtools
Users that are interested in tmtools are comparing it to the libraries listed below
Sorting:
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated last year
- Automated construction of protein chimeras and their analysis.☆14Sep 29, 2023Updated 2 years ago
- Python implementation of the TMscore program☆43Apr 29, 2024Updated last year
- ☆40Jul 28, 2025Updated 7 months ago
- ☆47Sep 25, 2024Updated last year
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆180Apr 6, 2023Updated 2 years ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆369Updated this week
- ☆30Oct 20, 2023Updated 2 years ago
- AbBiBench (Antibody Binding Benchmarking), a benchmarking framework for optimizing antibody binding affinity.☆36Oct 13, 2025Updated 4 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- ☆39Jun 25, 2025Updated 8 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Nov 7, 2024Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Jun 11, 2025Updated 8 months ago
- Diffusion-based all-atom protein generative model.☆232Aug 27, 2025Updated 6 months ago
- Fitness landscapes for antibodies☆153Dec 23, 2025Updated 2 months ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 2 years ago
- Disordered protein ensemble prediction☆12Feb 19, 2026Updated last week
- Benchmarking code accompanying the release of `bioemu`☆54Nov 25, 2025Updated 3 months ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- ☆15Apr 3, 2025Updated 11 months ago
- ☆13Feb 20, 2024Updated 2 years ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- ☆19Nov 28, 2025Updated 3 months ago
- Extension of ThermoMPNN for double mutant predictions☆54Oct 8, 2025Updated 4 months ago
- Origin-1: a generative AI platform for de novo antibody design against novel epitopes☆51Jan 15, 2026Updated last month
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 2 years ago
- ☆76Sep 25, 2024Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆116Jan 28, 2026Updated last month
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,169Feb 21, 2026Updated last week
- ☆11May 3, 2025Updated 10 months ago
- Protein representation and design under a single training scheme☆24Updated this week
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆226Aug 7, 2025Updated 6 months ago
- ☆10Mar 10, 2023Updated 2 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 10 months ago
- Kuhlman Lab Installation of AlphaFold3☆39Sep 30, 2025Updated 5 months ago
- ☆33Oct 14, 2024Updated last year
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆111Updated this week
- GTalign, high-performance protein structure alignment, superposition and search☆54Aug 18, 2025Updated 6 months ago