Alternatives and similar repositories for tmtools

Users that are interested in tmtools are comparing it to the libraries listed below

• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆71Updated 4 years ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆97Updated 2 years ago
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆96Updated 5 months ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆52Updated 4 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆119Updated 8 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆88Updated 5 months ago
• dahjan / DMS_opt
  ☆73Updated 5 years ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆124Updated 3 weeks ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆50Updated 2 years ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆126Updated last week
• idlutz / protein-backbone-MCTS
  ☆51Updated last year
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆144Updated 2 months ago
• liuyf020419 / SCUBA-D
  ☆62Updated last year
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆76Updated 2 months ago
• ELELAB / RosettaDDGPrediction
  ☆81Updated 9 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆63Updated 2 months ago
• levinthal / Pallatom
  ☆126Updated 5 months ago
• yehlincho / BoltzDesign1
  ☆220Updated 3 months ago
• jproney / AF2Rank
  ☆114Updated 2 years ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆142Updated 7 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆90Updated 2 months ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆130Updated 3 years ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 3 years ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆57Updated 5 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆84Updated last year
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆73Updated 5 years ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆166Updated last month
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆105Updated 2 weeks ago
• Kuhlman-Lab / evopro
  ☆91Updated last month