The official repository for the ARSENAL model
☆18Jul 3, 2026Updated last month
Alternatives and similar repositories for regulatory_lm
Users that are interested in regulatory_lm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆49May 7, 2026Updated 3 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆69Apr 1, 2026Updated 4 months ago
- AlphaGenome PyTorch port☆156Updated this week
- Annotated sequence data☆11Feb 2, 2025Updated last year
- ☆13Jan 23, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆19Mar 15, 2026Updated 4 months ago
- PARM: Promoter Activity Regulatory Model☆25Jul 27, 2026Updated last week
- DeepSEA implements in PyTorch☆25Jun 5, 2019Updated 7 years ago
- This repository contains the codebase for the paper "Leveraging ancestral sequence reconstruction for protein representation learning".☆13Jun 24, 2026Updated last month
- ☆52Mar 22, 2026Updated 4 months ago
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆15Feb 4, 2026Updated 6 months ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated last year
- ☆17Dec 17, 2025Updated 7 months ago
- ☆28Dec 10, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 5 months ago
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 8 months ago
- A Python wrapper for the bioRxiv API.☆11Aug 18, 2021Updated 4 years ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- Biological sequence analysis for the modern age.☆308Jul 19, 2026Updated 3 weeks ago
- Equivariant layers for RC-complement symmetry in DNA sequence data☆13Feb 24, 2022Updated 4 years ago
- Linear Mode Connectivity in Multitask and Continual Learning: https://arxiv.org/abs/2010.04495☆13Oct 12, 2020Updated 5 years ago
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated 11 months ago
- ☆12Mar 19, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆20Dec 5, 2024Updated last year
- Genomic sequence preprocessing toolkit☆14Jul 27, 2026Updated last week
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 3 months ago
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆13May 9, 2026Updated 3 months ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆20Mar 2, 2026Updated 5 months ago
- A python port of the R package SCTransform:☆21Jul 10, 2021Updated 5 years ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 6 years ago
- Create cell sentences from sequencing data☆23Aug 12, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆25Aug 20, 2024Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆44Jul 3, 2025Updated last year
- ☆16Feb 28, 2025Updated last year
- Allen Brain Atlas utilities, parsers and data structures☆11Jun 25, 2017Updated 9 years ago
- A fast, precise, pure Python implementation of Fisher's exact test☆12Mar 27, 2017Updated 9 years ago
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 7 months ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago