RSCJacksonLab / local-ancestral-sequence-embeddingsLinks
This repository contains the codebase for the paper "Leveraging ancestral sequence reconstruction for protein representation learning".
☆11Updated 3 months ago
Alternatives and similar repositories for local-ancestral-sequence-embeddings
Users that are interested in local-ancestral-sequence-embeddings are comparing it to the libraries listed below
Sorting:
- Active Learning-Assisted Directed Evolution for Protein Engineering☆61Updated 7 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆60Updated 2 weeks ago
- Making Protein folding accessible to all!☆22Updated last year
- ☆43Updated 10 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 7 months ago
- Extension of ThermoMPNN for double mutant predictions☆36Updated 2 weeks ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆35Updated 11 months ago
- ☆81Updated last month
- ☆27Updated last year
- ☆29Updated 3 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated last month
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆18Updated 6 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆29Updated last year
- ☆42Updated 2 weeks ago
- ☆31Updated 11 months ago
- ☆70Updated 5 months ago
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆50Updated 3 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆63Updated this week
- ☆31Updated 3 weeks ago
- Kuhlman Lab Installation of AlphaFold3☆28Updated 2 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆40Updated last week
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆63Updated 3 months ago
- ☆70Updated 3 months ago
- Code for humanization of antibody and nanobody☆44Updated 7 months ago
- Analysis of alphafold and colabfold results☆30Updated last week
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆29Updated last week
- ☆23Updated last year
- ☆28Updated 5 months ago
- ☆60Updated last year
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆21Updated 4 months ago