RSCJacksonLab / local-ancestral-sequence-embeddingsLinks
This repository contains the codebase for the paper "Leveraging ancestral sequence reconstruction for protein representation learning".
☆12Updated 4 months ago
Alternatives and similar repositories for local-ancestral-sequence-embeddings
Users that are interested in local-ancestral-sequence-embeddings are comparing it to the libraries listed below
Sorting:
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆62Updated last month
- ML-optimized library design with improved fitness and diversity for protein engineering☆35Updated last year
- ☆52Updated last month
- ☆27Updated last year
- ☆33Updated 5 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆34Updated last week
- Extension of ThermoMPNN for double mutant predictions☆43Updated 3 weeks ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆65Updated last month
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆18Updated 7 months ago
- code for IDR binding paper 2025☆47Updated 6 months ago
- ☆44Updated 11 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- ☆86Updated last month
- ☆75Updated 6 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆65Updated 9 months ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆83Updated 4 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 9 months ago
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆23Updated 5 months ago
- Making Protein folding accessible to all!☆22Updated last year
- Code for humanization of antibody and nanobody☆49Updated 9 months ago
- ☆31Updated last year
- ☆68Updated 2 weeks ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆65Updated 2 weeks ago
- Small_molecule_binder_design_use_pseudocycles☆20Updated 9 months ago
- ☆42Updated 2 months ago
- ☆14Updated 2 years ago
- ☆70Updated 5 months ago
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆54Updated 4 months ago
- A command-line interface and Python library for generating AlphaFold3 input files.☆35Updated 2 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆32Updated 3 weeks ago