Alternatives and similar repositories for MachineLearning4Genomics

Users that are interested in MachineLearning4Genomics are comparing it to the libraries listed below

• bpucker / AppliedGenomeResearch
  course about NGS data processing: genomics and transcriptomics
  ☆33Updated 4 years ago
• crazyhottommy / awesome-long-reads
  tools and notes for long reads analysis
  ☆24Updated 10 months ago
• alejandrogzi / gxf2bed
  fastest GTF/GFF-to-BED converter chilling around
  ☆30Updated 2 weeks ago
• bpucker / MolecularMethodsInGenomeResearch
  practical course about lab methods in genome research
  ☆23Updated 3 years ago
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆17Updated 5 months ago
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated 10 months ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated last year
• crazyhottommy / compbio_resources_chatomics
  ☆27Updated 2 years ago
• plasslab / SCALPEL
  Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.
  ☆31Updated 3 months ago
• hbctraining / Intro-to-rnaseq-hpc-salmon
  ☆50Updated 4 years ago
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆26Updated 2 years ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated 2 years ago
• bpucker / APPLS
  Applied Python Programming for Life Scientists
  ☆26Updated 4 years ago
• gexijin / shinygo
  ☆33Updated 2 months ago
• yge15 / Cancer_Microbiome_Reanalyzed
  supplementary tables and files
  ☆10Updated 2 years ago
• crazyhottommy / oneliner_100day_challenge
  Bioinformatics one-liner for 100 days
  ☆49Updated last year
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆38Updated 3 years ago
• pachterlab / fastQpick
  ☆27Updated 11 months ago
• jsalignon / cactus
  Chromatin ACcessibility and Transcriptomics Unifying Software
  ☆17Updated last year
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆51Updated 2 months ago
• Danko-Lab / proseq2.0
  Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing
  ☆30Updated last year
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆93Updated 6 months ago
• weng-lab / TEMP2
  Algorithm to detect germline and de novo transposon insertions
  ☆31Updated 5 months ago
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆78Updated 4 months ago
• gaolabtools / scNanoGPS
  Single cell Nanopore sequencing data for Genotype and Phenotype
  ☆57Updated 8 months ago
• hbctraining / Intro-to-variant-analysis
  ☆35Updated 8 months ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆99Updated 2 months ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆63Updated 8 months ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆38Updated 2 weeks ago
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆74Updated this week