charlesxu90 / helm-gpt
HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer
☆24Updated 10 months ago
Alternatives and similar repositories for helm-gpt:
Users that are interested in helm-gpt are comparing it to the libraries listed below
- ☆20Updated 7 months ago
- ☆32Updated last year
- Repo contains source code of the SurfaceID paper☆22Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆51Updated 5 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- ☆27Updated last month
- ☆49Updated last month
- Quantitative Estimate Index for Early-Stage Screening of Compounds Targeting Protein-Protein Interactions☆18Updated last year
- Making Protein folding accessible to all!☆22Updated last year
- ☆33Updated last month
- A deep learning framework for predicting interactions between protein-protein interaction targets and modulators☆14Updated last year
- Efficient manipulation of protein structures in Python☆53Updated 6 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆46Updated 4 months ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆25Updated last week
- ☆34Updated 7 months ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 2 months ago
- ☆31Updated last year
- ☆18Updated 2 months ago
- Fast and accurate molecular docking with an AI pose scoring function☆37Updated last year
- Cyclic-peptide - protein complexes benchmark and associated scripts and data☆11Updated 8 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆56Updated 2 months ago
- ☆18Updated 6 months ago
- Implementation of CycPeptMP, an accurate and efficient model for predicting the membrane permeability of cyclic peptides☆21Updated 2 weeks ago
- Fragment-based Molecular Expansion☆20Updated last year
- ☆26Updated 3 months ago
- ☆33Updated last year
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆42Updated 2 years ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆36Updated 2 years ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆65Updated last month
- Extension of ThermoMPNN for double mutant predictions☆32Updated last month