☆35Dec 30, 2016Updated 9 years ago
Alternatives and similar repositories for easyGgplot2
Users that are interested in easyGgplot2 are comparing it to the libraries listed below
Sorting:
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- Codebase for WHO estimates of excess mortality associated with the COVID-19 pandemic☆12Feb 25, 2023Updated 3 years ago
- Command line client and Python libraries for CosmosID API☆12Oct 28, 2025Updated 4 months ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 2 months ago
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- Building a Chinese pan-genome of 486 individuals☆12Nov 23, 2022Updated 3 years ago
- ☆14Feb 4, 2026Updated 3 weeks ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Jul 30, 2024Updated last year
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 5 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Jul 14, 2024Updated last year
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Oct 29, 2025Updated 4 months ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆12Aug 20, 2024Updated last year
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- A Framework for Chromatin Architecture Data Processing, Handling and Analysis☆10Feb 21, 2026Updated last week
- An Optimized Nested TAD caller for Hi-C data☆25Jun 30, 2021Updated 4 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆13Feb 29, 2020Updated 6 years ago
- Code and data sharing of Liu et al. 2023 manuscript☆16Apr 18, 2023Updated 2 years ago
- ☆12Feb 6, 2024Updated 2 years ago
- The Reproducible Programming in R course, developed by the School of Biodiversity, One Health and Veterinary Medicine at the University o…☆12Dec 20, 2022Updated 3 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆52Jan 8, 2024Updated 2 years ago
- IslandPath standalone software☆36Nov 7, 2023Updated 2 years ago
- R Markdown YAML metadata (header) tutorial with examples☆13Jun 11, 2021Updated 4 years ago
- Plasmid and antimicrobial resistance pipeline☆16Dec 30, 2024Updated last year
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆12Mar 22, 2023Updated 2 years ago
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 5 years ago
- antimicrobial peptide prediction in R☆33Dec 17, 2024Updated last year
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- GENome Organisation Visual Analytics☆15Dec 24, 2021Updated 4 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 4 years ago
- Bacterial taxonomy construction and evaluation in R☆15Jan 30, 2024Updated 2 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 3 years ago
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- zDB: comparative bacterial genomics made easy☆38Feb 2, 2026Updated last month