R Markdown YAML metadata (header) tutorial with examples
☆13Jun 11, 2021Updated 4 years ago
Alternatives and similar repositories for rmarkdown-YAML
Users that are interested in rmarkdown-YAML are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Dec 7, 2025Updated 3 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Jul 30, 2024Updated last year
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆12Mar 10, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 5 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Jul 14, 2024Updated last year
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 3 years ago
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- Plasmid and antimicrobial resistance pipeline☆16Dec 30, 2024Updated last year
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 5 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …☆21Oct 2, 2025Updated 5 months ago
- Bacterial taxonomy construction and evaluation in R☆15Jan 30, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- An introduction to processing wearable sensor data☆21Jul 18, 2024Updated last year
- ☆12Jan 12, 2016Updated 10 years ago
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated last month
- More robust R programming, testing and debugging☆16Feb 26, 2016Updated 10 years ago
- A script for comparing old vs new versions of genome annotations☆21Aug 1, 2023Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- An easy way of MLSTyping your genomes in R.☆19Dec 21, 2020Updated 5 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 2 years ago
- Bioconductor R-package: Curated Prostate Cancer Data☆11Oct 1, 2024Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- Text, data and code to accompany the analysis of the 1989 excavation data☆15Oct 6, 2017Updated 8 years ago
- Convert images to ANSI with R☆23Oct 16, 2020Updated 5 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆21Apr 20, 2023Updated 2 years ago
- Tools for exploring distance matrices using circular plots.☆32Jul 4, 2017Updated 8 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Oct 26, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Use vacant ggplot2 facets for advertising☆28Jul 8, 2020Updated 5 years ago
- A healthy human gut genome collection☆25Aug 21, 2025Updated 7 months ago
- ☆22Apr 3, 2023Updated 2 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Mar 18, 2026Updated last week
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated last year
- Adding various geometrical shapes to ggplot2☆24Mar 16, 2019Updated 7 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆25Nov 19, 2025Updated 4 months ago