kanamekojima / STR-realigner
☆9Updated 8 years ago
Alternatives and similar repositories for STR-realigner
Users that are interested in STR-realigner are comparing it to the libraries listed below
Sorting:
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- ☆21Updated last month
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- ☆14Updated last year
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Long-read splice alignment with high accuracy☆63Updated 7 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Population-wide Deletion Calling☆35Updated last month
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Sample Contamination Estimate from VCF☆19Updated 6 months ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- A comprehensive pipeline to analyze and visualize structural variants☆20Updated 5 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 11 months ago