kaiko-ai / evaLinks
Evaluation framework for oncology foundation models (FMs)
☆146Updated this week
Alternatives and similar repositories for eva
Users that are interested in eva are comparing it to the libraries listed below
Sorting:
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆108Updated 2 months ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated last year
- This repository contains the official implementation of the research paper: "Towards Training Large-Scale Pathology Foundation Models: fr…☆35Updated last year
- Pretrained model for self supervised histopathology☆122Updated 3 years ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆56Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- ☆43Updated last year
- ☆67Updated last year
- Stain normalization tools for histological analysis and computational pathology☆173Updated 2 months ago
- Histopathology Image Analysis☆92Updated 2 years ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆113Updated 11 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆84Updated last year
- ☆93Updated 7 months ago
- Solid Tumor Associative Modeling in Pathology☆108Updated last week
- Whole Slide image (WSI) conversion for brightfield histology images☆37Updated last month
- Feather - Lightweight supervised slide foundation models (ICML 2025)☆128Updated 2 weeks ago
- Pipeline for computational pathology☆37Updated 2 years ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆84Updated last year
- Notebooks for working with The Cancer Imaging Archive datasets. Have you written one? Submit a PR!☆127Updated last month
- Standardized benchmark for computational pathology foundation models.☆124Updated 2 months ago
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆99Updated last year
- GPU-accelerated stain normalization command line tool☆24Updated 2 years ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆164Updated last year
- Encoder-Decoder Cell and Nuclei segmentation models☆95Updated 2 months ago
- Virtual Alignment of pathoLogy Image Series☆200Updated 6 months ago
- Python 3 library for the augmentation & normalization of H&E images☆62Updated 3 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆141Updated last year
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆262Updated 2 years ago
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.☆25Updated last year
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆57Updated last year