Alternatives and similar repositories for wsi-preprocessing

Users that are interested in wsi-preprocessing are comparing it to the libraries listed below

• DIAGNijmegen / pathology-hooknet
  ☆63Updated 11 months ago
• KatherLab / HIA
  Histopathology Image Analysis
  ☆92Updated 2 years ago
• lucasrla / wsi-tile-cleanup
  Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning
  ☆28Updated 4 years ago
• DIAGNijmegen / pathology-he-auto-augment
  H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
  ☆57Updated 2 years ago
• mahmoodlab / Patch-GCN
  Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
  ☆154Updated last year
• MarvinLer / tcga_segmentation
  Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
  ☆139Updated 4 years ago
• YashSharma / C2C
  Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.
  ☆62Updated 3 years ago
• andreped / fast-stain-normalization
  GPU-accelerated stain normalization command line tool
  ☆22Updated last year
• Xiyue-Wang / RetCCL
  ☆102Updated last year
• vqdang / H2T
  ☆35Updated 2 years ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆105Updated 9 months ago
• smujiang / WSITools
  Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…
  ☆55Updated 8 months ago
• hrlblab / CS-MIL
  ☆53Updated 4 months ago
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆81Updated last year
• wenqi006 / SlideGraph
  ☆55Updated 3 years ago
• agentdr1 / LA_MIL
  Implementation of LA_MIL, Local Attention Graph-based Transformer for WSIs, PyTorch
  ☆24Updated last year
• tand826 / wsiprocess
  Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks
  ☆24Updated last year
• liupei101 / AdvMIL
  AdvMIL: Adversarial Multiple Instance Learning for the Survival Analysis on Whole-Slide Images — Medical Image Analysis 2024
  ☆37Updated last year
• PhilipChicco / MICCAI2020mil
  MICCAI2020. "Multiple Instance Learning with Center Embeddings for Histopathology Image Classification"
  ☆39Updated 4 years ago
• uta-smile / DeepAttnMISL
  Contains codes of DeepAttnMISL in MEDIA'20
  ☆58Updated 4 years ago
• TissueImageAnalytics / cerberus
  One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
  ☆93Updated 8 months ago
• PathologyDataScience / HiPS
  Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
  ☆31Updated last year
• cwlkr / torchvahadane
  Gpu accelerated vahadane stain normalization for Digital Pathology workflows.
  ☆25Updated last year
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆68Updated 2 years ago
• yiqings / RandStainNA
  RandStainNA: Simple and efficient augmentations for histology [MICCAI 2022]
  ☆54Updated 2 years ago
• mahmoodlab / SurvPath
  Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024
  ☆144Updated 9 months ago
• aimagelab / mil4wsi
  DAS-MIL: Distilling Across Scales for MILClassification of Histological WSIs
  ☆61Updated 8 months ago
• MWod / DeeperHistReg
  DeeperHistReg - Source Code
  ☆69Updated last year
• mahmoodlab / Patho-Bench
  Standardized benchmark for computational pathology foundation models.
  ☆96Updated 2 weeks ago
• histocartography / hact-net
  ☆71Updated 4 years ago