TissueImageAnalytics / cerberusLinks
One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
☆93Updated 9 months ago
Alternatives and similar repositories for cerberus
Users that are interested in cerberus are comparing it to the libraries listed below
Sorting:
- ☆63Updated 11 months ago
- ☆56Updated 3 years ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆154Updated last year
- Encoder-Decoder Cell and Nuclei segmentation models☆93Updated last week
- DeeperHistReg - Source Code☆69Updated last year
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- Python library for processing whole slide images (WSIs) in sdpc format☆56Updated 6 months ago
- ☆53Updated 4 months ago
- ☆64Updated 3 years ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆54Updated 3 years ago
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆55Updated 8 months ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆139Updated 4 years ago
- Histopathology Image Analysis☆92Updated 2 years ago
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.☆25Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆68Updated 2 years ago
- ☆35Updated 2 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆105Updated 9 months ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆31Updated last year
- Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.☆62Updated 3 years ago
- Pix2Pix-based Stain-to-Stain Translation: A Solution for Robust Stain Normalization in Histopathology Images Analysis☆33Updated 5 years ago
- Repository for "SAM-Path: A Segment Anything Model for Semantic Segmentation in Digital Pathology" (MedAGI2023, MICCAI2023 workshop)☆43Updated 11 months ago
- Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…☆164Updated 3 years ago
- Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…☆24Updated this week
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆81Updated last year
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆55Updated last year
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆314Updated last month
- DAS-MIL: Distilling Across Scales for MILClassification of Histological WSIs☆61Updated 9 months ago
- A graph-transformer for whole slide image classification☆169Updated last year
- Stain normalization tools for histological analysis and computational pathology☆151Updated 7 months ago
- ☆70Updated 4 years ago