Pipelines in genomics
☆23Jun 17, 2026Updated 3 weeks ago
Alternatives and similar repositories for pigx
Users that are interested in pigx are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Two methods for mapping and visualizing associated data on phylogeny using ggtree☆12Dec 25, 2018Updated 7 years ago
- Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM☆28Feb 6, 2024Updated 2 years ago
- This repository contains training material developed by the Microbial Ecology Group to introduce researchers to the R programming languag…☆12Aug 9, 2021Updated 4 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆19Apr 3, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆63May 9, 2025Updated last year
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Sep 21, 2022Updated 3 years ago
- Make rapid visualizations of RNA-seq data in R☆20Oct 7, 2025Updated 9 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Oct 14, 2025Updated 8 months ago
- Code repository for the HAYSTAC pipeline☆15Oct 25, 2024Updated last year
- ☆12Feb 26, 2019Updated 7 years ago
- Markdown version of Cytoscape manual☆12Sep 27, 2025Updated 9 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Repository for Bioinformatics scripts and basic programs developed by L.M.C☆10Jun 2, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DEvis: an R package for aggregation and visualization of differential expression data☆18Dec 9, 2020Updated 5 years ago
- A single package (command line tool and library) in Java to validate, simulate, translate and analyse NeuroML 2 models☆12May 19, 2026Updated last month
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- Source code of the Bgee pipeline used to build the Bgee database☆12Jun 2, 2026Updated last month
- Illumina analysis pipeline☆14Apr 6, 2020Updated 6 years ago
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- Validate and edit small eukaryotic genome assemblies☆32Apr 28, 2023Updated 3 years ago
- Python CLI for alignment-free genomics.☆13May 25, 2026Updated last month
- ☆10Apr 30, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GitHub for CPSC298☆11Aug 4, 2019Updated 6 years ago
- Materials for the MOSAIC "Teaching Statistics with R and RStudio"☆23Jun 22, 2018Updated 8 years ago
- R package with Shiny application for DGE analysis☆12Jan 8, 2024Updated 2 years ago
- Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.☆19Nov 30, 2017Updated 8 years ago
- ☆12Apr 15, 2025Updated last year
- Principal component analysis plugin for D3.js☆10Aug 20, 2017Updated 8 years ago
- Viroid Nominator (VNom): reference free tool for nominating viroid-like de novo assembled contigs☆19Jan 21, 2024Updated 2 years ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆14Jan 14, 2018Updated 8 years ago
- 16S pipeline using qiime2 created with snakemake☆12Jun 28, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- Kokoro Manim Voiceover☆16Jan 14, 2026Updated 5 months ago
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- Kivy port of Dataframe GUI module. Original wxPython implementation can be found here: https://github.com/bluenote10/PandasDataFrameGUI☆11Aug 10, 2020Updated 5 years ago
- Statistical analysis of dissolved organic matter based on high-resolution mass spectrometry☆19Jun 28, 2026Updated last week
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Jan 27, 2020Updated 6 years ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆12May 16, 2023Updated 3 years ago