MASILab / pyPheWASLinks
MASI Lab Implementation of PheWAS in Python
☆28Updated last year
Alternatives and similar repositories for pyPheWAS
Users that are interested in pyPheWAS are comparing it to the libraries listed below
Sorting:
- Tofu is a Python tool for generating synthetic UK Biobank data.☆66Updated 2 years ago
- ☆66Updated 4 years ago
- https://celehs.github.io/PheCAP/☆22Updated 4 years ago
- ETL UK-Biobank☆16Updated 3 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆38Updated 2 months ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆58Updated 2 years ago
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆50Updated last year
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆38Updated 3 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 5 years ago
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆27Updated 3 years ago
- ☆160Updated 2 weeks ago
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆26Updated 4 years ago
- Python package for machine learning for healthcare using a OMOP common data model☆111Updated 2 years ago
- Leveraging☆12Updated 2 years ago
- Prepare UK Biobank Electronic Health Record data for research☆30Updated 3 years ago
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆22Updated last year
- SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases☆77Updated 6 months ago
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆140Updated 4 months ago
- A resource of adverse drug effects extracted from FDA structured product labels☆88Updated 6 months ago
- Data structures and code to read/write BioC XML and Json.☆33Updated 2 years ago
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆73Updated 4 months ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆93Updated 2 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆70Updated 6 months ago
- ☆55Updated 5 years ago
- ☆40Updated 3 years ago
- An R package for evaluating phenotype algorithms.☆21Updated last month
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆29Updated 4 years ago
- ☆70Updated last year
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆73Updated 2 weeks ago
- Open source engine for matching cancer patients to precision medicine clinical trials (V2).☆38Updated 2 years ago