jhclark / memusg
A 'time'-like utility for Unix that measures peak memory usage
☆66Updated 12 years ago
Alternatives and similar repositories for memusg:
Users that are interested in memusg are comparing it to the libraries listed below
- An optimal space run-length Burrows-Wheeler transform full-text index☆26Updated 3 years ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- Graph based multi genome aligner☆47Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆36Updated last year
- Small general purpose library for C and Python with focus on bioinformatics.☆30Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- ☆28Updated last year
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Updated 11 months ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- Parallel Sequence to Graph Alignment☆35Updated 2 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- PacBio BAM C++ library☆21Updated last year
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 3 weeks ago
- Pan-genome Seed Index☆20Updated last week
- A 'time'-like utility for Unix that measures peak memory usage☆18Updated 9 months ago
- Practical Dynamic de Bruijn Graphs☆18Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 2 years ago
- Python bindings to minimap2☆16Updated 7 years ago
- A repository for generating strobemers and evalaution☆77Updated 11 months ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆68Updated 6 years ago
- Histosketching Using Little Kmers☆56Updated last year
- Fulgor is a fast and space-efficient colored de Bruijn graph index.☆49Updated 3 weeks ago
- Streaming sequence classification with web services ✓📌☆19Updated 2 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆40Updated last month
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆43Updated 5 years ago