Precision-Recall based assessment for CAFA
☆16Dec 6, 2019Updated 6 years ago
Alternatives and similar repositories for CAFA_assessment_tool
Users that are interested in CAFA_assessment_tool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- S2F: protein function without experiments☆15Nov 24, 2025Updated 10 months ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago
- DeepGO with GOPlus axioms☆103Oct 23, 2025Updated 11 months ago
- ☆51Dec 2, 2024Updated last year
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Nucleic acids Structure Prediction☆10May 21, 2020Updated 6 years ago
- Contact-based protein structure prediction☆10Feb 12, 2019Updated 7 years ago
- Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"☆41Jul 6, 2023Updated 3 years ago
- Overlapping clustering algorithm for biological and non-biological networks alike☆14Dec 23, 2017Updated 8 years ago
- Improving protein function prediction with synthetic feature samples created by generative adversarial networks☆22Oct 6, 2020Updated 5 years ago
- This repository collects drivers for peripherals used in Arduino with LinkIt 7697.☆12Aug 14, 2018Updated 8 years ago
- Contact map alignment☆44Feb 3, 2021Updated 5 years ago
- Predicting RNA 3D structure and conformers using a pre-trained secondary structure model and structure-aware attention☆40Updated this week
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆13Jun 28, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Matlab Evaluation codes for the 2nd CAFA experiment☆14Nov 27, 2023Updated 2 years ago
- Simulation code for the prediction of RNA structures.☆14Jan 21, 2025Updated last year
- ☆15Jan 27, 2025Updated last year
- reactive MD python pipeline for GROMACS using Kinetic Monte Carlo / Molecular Dynamics (KIMMDY)☆14Nov 19, 2019Updated 6 years ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Jul 28, 2021Updated 5 years ago
- ZenChain Node ❤️ of ZenChain Network☆16May 17, 2021Updated 5 years ago
- Deep convolutional networks for fold recognition☆22Nov 8, 2019Updated 6 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- Client only USCIS API case tracker☆24Jan 23, 2026Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Predict binding affinity of ligand-protein complexes using Graph Neural Networks. The model is implemented using PyTorch Geometric and ba…☆11Nov 26, 2022Updated 3 years ago
- This is the implementation repository of our incoming ESEC/FSE 2021 paper: Exposing Numerical Bugs in Deep Learning via GradientBack-prop…☆15Oct 16, 2022Updated 3 years ago
- GOProteinGNN: Leveraging Protein Knowledge Graphs for Protein Representation Learning☆13May 13, 2025Updated last year
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Jan 10, 2018Updated 8 years ago
- ☆17Nov 11, 2022Updated 3 years ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- DiffModeler: a diffusion model based protein complex structure modeling tool.☆59Jan 12, 2026Updated 8 months ago
- Method for constructing embeddings of GO terms.☆14Nov 25, 2021Updated 4 years ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆64Jan 26, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a deep learning framework for essential protein prediction☆13Mar 24, 2023Updated 3 years ago
- Functional TensorFlow Implementation of Singular Value Decomposition for paper Fast Graph Learning☆13Feb 23, 2021Updated 5 years ago
- ☆13Oct 19, 2023Updated 2 years ago
- Reasoner for the description logic EL+.☆17Sep 7, 2026Updated 2 weeks ago
- ☆12Nov 13, 2025Updated 10 months ago
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 6 years ago
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago