Alternatives and similar repositories for CAFA_assessment_tool:

Users that are interested in CAFA_assessment_tool are comparing it to the libraries listed below

• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆60Updated 7 months ago
• yourh / DeepGraphGO
  DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction
  ☆35Updated 3 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆108Updated 3 years ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆119Updated 4 years ago
• luoyunan / ECNet
  An evolutionary context-integrated deep learning framework for protein engineering
  ☆63Updated 2 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆107Updated last year
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆61Updated 3 years ago
• xzenglab / TAGPPI
  ☆20Updated last year
• muhaochen / seq_ppi
  This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…
  ☆96Updated 2 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆124Updated 3 years ago
• fangyangbit / S-VGAE
  ☆19Updated 5 years ago
• varun-shanker / structural-evolution
  ☆99Updated 8 months ago
• bmd2007 / benchmark_eval
  ☆15Updated 2 years ago
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆70Updated 4 years ago
• YAndrewL / CLAPE
  contrastive learning and pre-trained encoder for protein-ligand binding sites prediction
  ☆27Updated 3 months ago
• Liuxg16 / GeoPPI
  ☆82Updated 2 years ago
• wk989898 / ARES-implement
  ARES implement in PyTorch
  ☆13Updated last year
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆316Updated 2 years ago
• MartinThoma / propy3
  A Python 3 version of the protein descriptor package propy
  ☆41Updated 2 years ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆94Updated 2 months ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆96Updated 6 months ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆58Updated last year
• yikunpku / RNA-MSM
  Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…
  ☆57Updated 8 months ago
• twopin / CAMP
  predicting peptide-protein interactions
  ☆128Updated last year
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆64Updated last week
• jertubiana / ScanNet
  ☆123Updated last year
• KailiWang1 / DeepDTAF
  a deep learning architecture for protein-ligand binding affinity prediction
  ☆73Updated last year
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆42Updated 3 years ago
• aqlaboratory / rgn2
  ☆104Updated last year
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆94Updated 2 weeks ago