Precision-Recall based assessment for CAFA
☆15Dec 6, 2019Updated 6 years ago
Alternatives and similar repositories for CAFA_assessment_tool
Users that are interested in CAFA_assessment_tool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- S2F: protein function without experiments☆16Nov 24, 2025Updated 4 months ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Dec 20, 2022Updated 3 years ago
- DeepGO with GOPlus axioms☆104Oct 23, 2025Updated 5 months ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- ☆51Dec 2, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆15Jan 27, 2025Updated last year
- Contact-based protein structure prediction☆10Feb 12, 2019Updated 7 years ago
- Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"☆41Jul 6, 2023Updated 2 years ago
- Improving protein function prediction with synthetic feature samples created by generative adversarial networks☆22Oct 6, 2020Updated 5 years ago
- This repository collects drivers for peripherals used in Arduino with LinkIt 7697.☆12Aug 14, 2018Updated 7 years ago
- Contact map alignment☆43Feb 3, 2021Updated 5 years ago
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆13Jun 28, 2024Updated last year
- Matlab Evaluation codes for the 2nd CAFA experiment☆14Nov 27, 2023Updated 2 years ago
- reactive MD python pipeline for GROMACS using Kinetic Monte Carlo / Molecular Dynamics (KIMMDY)☆13Nov 19, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A Heterogeneous Graph Transformer (HGT)-based model for protein function prediction using biological knowledge graphs and protein languag…☆18Jan 27, 2026Updated 2 months ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Jul 28, 2021Updated 4 years ago
- ZenChain Node ❤️ of ZenChain Network☆16May 17, 2021Updated 4 years ago
- This is the implementation repository of our incoming ESEC/FSE 2021 paper: Exposing Numerical Bugs in Deep Learning via GradientBack-prop…☆15Oct 16, 2022Updated 3 years ago
- Deep convolutional networks for fold recognition☆22Nov 8, 2019Updated 6 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- Method for constructing embeddings of GO terms.☆14Nov 25, 2021Updated 4 years ago
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Jan 10, 2018Updated 8 years ago
- DiffModeler: a diffusion model based protein complex structure modeling tool.☆58Jan 12, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 2 years ago
- ☆11Nov 13, 2025Updated 4 months ago
- ☆16Nov 11, 2022Updated 3 years ago
- Reasoner for the description logic EL+.☆15Mar 10, 2026Updated 2 weeks ago
- HESML Java software library of ontology-based semantic similarity measures and information content models☆14Oct 13, 2022Updated 3 years ago
- InterLabelGO+: Unraveling label correlations in protein function prediction☆15Aug 5, 2025Updated 7 months ago
- ☆13Oct 19, 2023Updated 2 years ago
- STRIDE: Protein secondary structure assignment from atomic coordinates☆15Apr 25, 2022Updated 3 years ago
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- 校园公众号，可以实现智能问答☆11Nov 21, 2017Updated 8 years ago
- GOProteinGNN: Leveraging Protein Knowledge Graphs for Protein Representation Learning☆13May 13, 2025Updated 10 months ago
- ☆15Feb 18, 2025Updated last year
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆46Jul 24, 2024Updated last year
- Predict binding affinity of ligand-protein complexes using Graph Neural Networks. The model is implemented using PyTorch Geometric and ba…☆11Nov 26, 2022Updated 3 years ago
- a deep learning framework for essential protein prediction☆13Mar 24, 2023Updated 3 years ago
- ☆29Jul 10, 2020Updated 5 years ago