cgoliver / RNAmigosLinks
GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)
☆16Updated 2 years ago
Alternatives and similar repositories for RNAmigos
Users that are interested in RNAmigos are comparing it to the libraries listed below
Sorting:
- ☆32Updated last year
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆43Updated 2 years ago
- ProCare: A Point Cloud Registration Approach to Align Protein Cavities☆30Updated 3 years ago
- Optimization of binding affinities in chemical space for drug discovery☆35Updated 2 years ago
- ☆22Updated 2 years ago
- Fragment-based Molecular Expansion☆27Updated 2 years ago
- ☆51Updated last year
- Interface-aware molecular generative framework for protein-protein interaction modulators☆18Updated last year
- Official implementation for ActFound (Nature Machine Intelligence): A bioactivity foundation model using pairwise meta-learning☆45Updated last year
- ☆39Updated last year
- ☆25Updated last month
- A Multi-Task Generative model for Structure-Based Drug Design☆57Updated last week
- Fast and accurate molecular docking with an AI pose scoring function☆42Updated last year
- development repository for PyInteraph2☆22Updated 10 months ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 8 months ago
- A deep learning framework for predicting interactions between protein-protein interaction targets and modulators☆14Updated 2 years ago
- Benchmarking compound activity prediction for real-world drug discovery applications☆14Updated last year
- HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer☆31Updated last year
- Python package for the analysis of natural and modified peptides using a set of modules to study their sequences☆46Updated 2 months ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆34Updated last year
- Docking Tool Benchmarking Workflow☆24Updated last year
- EViS: an Enhanced Virtual Screening Approach based on Pocket Ligand Similarity☆14Updated 4 years ago
- ☆15Updated last year
- Automatic extraction of interacting compound-target pairs from ChEMBL.☆21Updated 4 months ago
- This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction tools☆17Updated last year
- Interaction profile extraction, scoring, alignment and evaluation of ShEPhERD. [ICLR 2025]☆32Updated this week
- Small molecules discovery with different active deep learning strategies. Codebase for the paper: "Traversing chemical space with active …☆28Updated last year
- ☆40Updated 7 months ago
- ☆38Updated 5 years ago
- ☆34Updated last year