The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.
☆16Feb 1, 2024Updated 2 years ago
Alternatives and similar repositories for SPOT-Contact-LM
Users that are interested in SPOT-Contact-LM are comparing it to the libraries listed below
Sorting:
- Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic app…☆21Aug 5, 2025Updated 7 months ago
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆24May 19, 2024Updated last year
- SPOT-1D-LM: Reaching Alignment-profile-based Accuracy in Predicting Protein Secondary and Tertiary Structural Properties without Alignmen…☆11Feb 1, 2024Updated 2 years ago
- Deep Neural Networks for Analysing NMR time domain data☆13Sep 26, 2024Updated last year
- GPT-based protein language model for PTM site prediction☆19Aug 11, 2024Updated last year
- BMRB data visualization tools using python Plotly☆15Aug 21, 2025Updated 6 months ago
- pip install the deep learning & HPC starter pack to begin your project.☆12Nov 6, 2024Updated last year
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Jul 28, 2021Updated 4 years ago
- UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine lear…☆24Jun 10, 2025Updated 8 months ago
- Single-sequence and Profile-based Prediction of RNA Solvent Accessibility Using Dilated Convolution Neural Network☆13Jun 22, 2022Updated 3 years ago
- Interactive NMR peak deconvolution☆18Sep 17, 2025Updated 5 months ago
- CXRMate: Longitudinal Data and a Semantic Similarity Reward for Chest X-Ray Report Generation☆18Feb 20, 2025Updated last year
- Parametric Building of de novo Functional Topologies☆44Mar 11, 2022Updated 3 years ago
- Geometry-aware protein binding site predictor☆25Aug 29, 2024Updated last year
- CNN model based on Google Inception model to predict regression values of regression values of Tetrahymena pyriformis IGC50 from 2D imag…☆19Nov 14, 2018Updated 7 years ago
- ☆24Nov 14, 2025Updated 3 months ago
- localCIDER - sequence analysis tool for disordered protein sequences☆24May 15, 2023Updated 2 years ago
- Open source short linear motif discovery and sequence analysis☆26Sep 19, 2024Updated last year
- Peptide library design☆23Sep 8, 2020Updated 5 years ago
- A machine learning based protein disorder predictor.☆28Oct 28, 2025Updated 4 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Aug 3, 2024Updated last year
- ☆22Mar 6, 2024Updated 2 years ago
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆30Sep 17, 2025Updated 5 months ago
- Next generation sequence parameter library for proteins☆38Feb 18, 2026Updated 2 weeks ago
- ☆26Mar 15, 2024Updated last year
- Effective drug-target interaction prediction with mutual interaction neural network☆33May 8, 2022Updated 3 years ago
- ☆31Feb 22, 2022Updated 4 years ago
- Deep Residual-Dense Lattice Network for Speech Enhancement☆25Nov 14, 2019Updated 6 years ago
- A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.☆32Jul 25, 2022Updated 3 years ago
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆34Apr 3, 2021Updated 4 years ago
- Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted cont…☆76Mar 1, 2022Updated 4 years ago
- ☆13May 27, 2025Updated 9 months ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆43Dec 16, 2024Updated last year
- Fast, accurate, and deterministic protein side-chain packing☆37Feb 28, 2025Updated last year
- Run multiple Pipeline5 instances at once☆11Jun 6, 2025Updated 9 months ago
- ☆13Aug 13, 2024Updated last year
- Bioinformatics'2022 PerceiverCPI: A nested cross-attention network for compound-protein interaction prediction☆39Nov 9, 2023Updated 2 years ago