jas-preet / SPOT-Contact-LM
The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.
☆16Updated last year
Alternatives and similar repositories for SPOT-Contact-LM:
Users that are interested in SPOT-Contact-LM are comparing it to the libraries listed below
- a fast and accurate physical energy function extended from EvoEF for protein sequence design☆29Updated last year
- Extension of ThermoMPNN for double mutant predictions☆32Updated last month
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆36Updated 2 years ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆54Updated 2 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆29Updated 10 months ago
- ☆32Updated last year
- ☆26Updated 9 months ago
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆26Updated 3 months ago
- ☆20Updated 2 years ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆31Updated 4 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated 11 months ago
- ☆14Updated 11 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆56Updated 2 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- ☆31Updated last year
- ML-optimized library design with improved fitness and diversity for protein engineering☆32Updated 9 months ago
- ☆20Updated 7 months ago
- ☆34Updated 7 months ago
- Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model☆21Updated 5 months ago
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆7Updated last year
- HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer☆24Updated 10 months ago
- Modelling protein conformational landscape with Alphafold☆47Updated 2 weeks ago
- ☆23Updated last year
- ☆21Updated 2 years ago
- Computationally Restoring the Potency of a Clinical Antibody☆18Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆50Updated 5 months ago
- ☆60Updated last year
- PepFun 2.0: improved protocols for the analysis of natural and modified peptides☆22Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆39Updated 5 months ago
- ☆35Updated last year