Teaching materials for improving research software writing abilities.
☆13Dec 1, 2025Updated 3 months ago
Alternatives and similar repositories for rse-skills-workshop
Users that are interested in rse-skills-workshop are comparing it to the libraries listed below
Sorting:
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Template for creating a new python repository☆13Sep 28, 2025Updated 5 months ago
- A napari plugin to view and edit layer metadata☆13Updated this week
- dask empowered fast4dreg☆15Feb 20, 2026Updated 2 weeks ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆28Mar 14, 2025Updated 11 months ago
- A portal for viewing FIB-SEM datasets☆13Feb 26, 2026Updated last week
- Affinity based segmentation algorithms and tools☆10May 12, 2025Updated 9 months ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 8 months ago
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- Quantitative Data Analysis for spectroscopic LEEM☆18Feb 17, 2022Updated 4 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Updated this week
- openpyxl is a Python library to read/write Excel 2010 xlsx/xlsm/xltx/xltm files.☆26Oct 21, 2024Updated last year
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Jan 28, 2026Updated last month
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Repositorio del material de libre acceso de las becas New Dimensions 2023.☆14Oct 19, 2023Updated 2 years ago
- MultiModal Big Image Data Sharing and Exploration☆18Jan 13, 2023Updated 3 years ago
- Optimize image processing workflows in napari☆17May 1, 2025Updated 10 months ago
- Linking napari layers with Matplotlib plots☆43Mar 1, 2026Updated last week
- A library to facilitate machine learning on multi-dimensional images.☆88Mar 2, 2026Updated last week
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Sep 15, 2025Updated 5 months ago
- Xarray version of Marine Heatwaves code by Eric Olivier☆26Sep 2, 2025Updated 6 months ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆29Updated this week
- Resources for teaching/preparing to teach bioimage analysis☆58Feb 25, 2026Updated last week
- Dataset EXploration & Processing☆33May 11, 2023Updated 2 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Oct 22, 2025Updated 4 months ago
- 1d plotting in napari-based canvas.☆25Feb 23, 2026Updated 2 weeks ago
- Type-safe, distributed orchestration of agents, ML pipelines, and real-time inference — in pure Python with async/await.☆79Updated this week
- A tool to migrate issues from GitLab to GitHub☆18Jan 21, 2025Updated last year
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- Cookiecutter for napari plugins☆71Nov 6, 2024Updated last year
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆37Feb 11, 2026Updated 3 weeks ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Updated this week
- Creating figures and animations for multi-channel images with a focus on microscopy.☆80Dec 16, 2024Updated last year
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 2 years ago
- 🎀 Awesome Zarr resources☆93Jun 14, 2024Updated last year
- Tool for segmentation in bioimaging☆35Mar 2, 2026Updated last week