☆14Oct 17, 2025Updated last year
Alternatives and similar repositories for scNodes
Users that are interested in scNodes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Jupyter-based tool for membrane segmentation manipulation☆10Jul 9, 2025Updated last year
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆30Oct 1, 2026Updated last month
- ☆30Oct 20, 2026Updated last week
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆42Jan 30, 2024Updated 2 years ago
- This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.☆27Jan 29, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆14May 22, 2025Updated last year
- Self-supervised deep learning framework for CryoET analysis☆20Sep 28, 2026Updated last month
- Generates synthetic datasets for Cryo-Electron Tomography☆40Aug 20, 2026Updated 2 months ago
- GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series☆25Sep 30, 2026Updated last month
- segmentation of spherical vesicles in cryo-electron tomography☆13Oct 25, 2024Updated 2 years ago
- ☆57Aug 19, 2024Updated 2 years ago
- Python module for compressed MRCZ-file format☆14Aug 27, 2026Updated 2 months ago
- ☆19Mar 20, 2026Updated 7 months ago
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- IMOD model files as pandas dataframes in Python☆14Oct 22, 2026Updated last week
- Reliable estimation of membrane curvature for cryo-electron tomography☆22Jun 19, 2026Updated 4 months ago
- Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.☆36Oct 16, 2026Updated 2 weeks ago
- Prompt-based segmentation and fine-tuning for data-efficient and flexible particle picking in cryo-ET tomograms☆14Mar 30, 2026Updated 7 months ago
- ☆87Oct 21, 2026Updated last week
- SerialEM mdoc files as pandas dataframes☆16Updated this week
- Singularity image for cryo-CARE☆38Jan 7, 2022Updated 4 years ago
- Particle annotations for the large-scale cryo-ET dataset of Chlamydomonas reinhardtii☆14Dec 22, 2025Updated 10 months ago
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆30Jun 29, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- cryo-ET workflow☆11Oct 23, 2026Updated last week
- a tool for using surfaces to explore volumetric data in napari☆22Jun 13, 2026Updated 4 months ago
- FakET: Simulating Cryo-Electron Tomograms with Neural Style Transfer☆11Aug 12, 2025Updated last year
- Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms☆33Oct 23, 2026Updated last week
- Self-supervised learning for isotropic cryoET reconstruction☆92Dec 29, 2024Updated last year
- The repository of NEUBIAS textbook 2021☆10Jan 24, 2022Updated 4 years ago
- Transformer And Rapid Dimensionless Instance Segmentation☆25Oct 15, 2026Updated 2 weeks ago
- Rapid Cryo-ET Reconstruction via Transform-Localized Deep Learning☆21Aug 11, 2026Updated 2 months ago
- Miscellaneous scripts for processing cryo-ET data☆23Jul 29, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆19Updated this week
- ☆25Oct 22, 2024Updated 2 years ago
- A tool to support interactive machine learning for cryoET data☆12Aug 30, 2024Updated 2 years ago
- Resources for Heinrich et al., 2021☆20May 28, 2021Updated 5 years ago
- Python module to read/write SerialEM navigator files.☆13Jan 17, 2023Updated 3 years ago
- Badly written scripts for making cryoEM easier☆13Dec 15, 2020Updated 5 years ago
- Half-synthetic cryoEM micrograph generator that projects pdbs>mrcs onto existing buffer cryoEM micrographs☆19Oct 25, 2024Updated 2 years ago