Alternatives and similar repositories for isambard

Users that are interested in isambard are comparing it to the libraries listed below

• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆114Updated last year
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆110Updated 2 weeks ago
• ncbi / SSDraw
  ☆84Updated last month
• pymodproject / pymod
  PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
  ☆82Updated 7 months ago
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆149Updated last week
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆93Updated 4 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• Electrostatics / apbs
  Software for biomolecular electrostatics and solvation calculations
  ☆111Updated last year
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆86Updated last week
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆162Updated 2 months ago
• mittinatten / freesasa
  C-library for calculating Solvent Accessible Surface Areas
  ☆160Updated 3 months ago
• mattarnoldbio / alphapickle
  ☆33Updated last year
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆43Updated 2 years ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆120Updated 2 years ago
• clauswilke / PeptideBuilder
  A simple Python library to generate model peptides
  ☆88Updated 4 years ago
• PDBeurope / pdbe-api-training
  Interactive Python notebooks for PDBe API training
  ☆56Updated 2 weeks ago
• rwmontalvao / Melodia_py
  Protein Structure Analysis
  ☆59Updated last week
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆33Updated 7 years ago
• harmslab / pdbtools
  A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files
  ☆178Updated 6 years ago
• dina-lab3D / CombFold
  ☆86Updated last year
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆52Updated 2 months ago
• tlemmin / glycosylator
  Framework for the rapid modeling glycans and glycoproteins.
  ☆31Updated 2 years ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆148Updated 5 months ago
• JoaoRodrigues / pdb-tools
  Set of Python scripts designed to be a dependency-free cross-platform swiss army knife for PDB files.
  ☆26Updated 3 years ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆97Updated 2 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 6 months ago
• rcsb / py-rcsbsearchapi
  Python interface for the RCSB PDB search API.
  ☆65Updated 6 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆101Updated 6 months ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆61Updated 6 months ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆103Updated last month