Alternatives and similar repositories for scNodes:

Users that are interested in scNodes are comparing it to the libraries listed below

• KosinskiLab / colabseg
  Jupyter-based tool for membrane segmentation manipulation
  ☆9Updated last year
• brisvag / blik
  Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
  ☆25Updated 5 months ago
• teamtomo / mdocfile
  SerialEM mdoc files as pandas dataframes
  ☆13Updated 3 months ago
• ZauggGroup / DeePiCt
  Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…
  ☆35Updated last year
• teamtomo / imodmodel
  IMOD model files as pandas dataframes in Python
  ☆11Updated last month
• GrotjahnLab / surface_morphometrics
  Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.
  ☆23Updated last week
• juglab / cryoCARE_T2T
  Singularity image for cryo-CARE
  ☆32Updated 3 years ago
• bionanopatterning / Ais
  ☆17Updated last month
• anmartinezs / pyseg_system
  De novo analysis for cryo-electron tomography
  ☆19Updated 6 months ago
• sklumpe / SerialFIB
  A Modular Platform for Streamlining Automated Cryo-FIB Workflows
  ☆24Updated 2 months ago
• teamtomo / libtilt
  Image processing for cryo-electron microscopy in PyTorch
  ☆13Updated last month
• alisterburt / napari-mrcfile-reader
  Read MRC format image files into napari using the mrcfile package from CCP-EM
  ☆18Updated 11 months ago
• builab / subtomo2Chimera
  ☆18Updated 2 months ago
• tomotools / tomotools
  Scripts to make cryo-electron tomography a bit easier
  ☆13Updated last week
• rsanchezgarc / micrograph_cleaner_em
  Cryo-EM micrograph segmentation through deep learning
  ☆21Updated 5 months ago
• carsonpurnell / cryotomosim_CTS
  cryo-EM tomogram simulator
  ☆25Updated 2 months ago
• czimaginginstitute / GCtfFind
  GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series
  ☆23Updated this week
• DeMarcoLab / autolamella
  autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.
  ☆19Updated this week
• alisterburt / autoalign_dynamo
  automated on-the-fly tilt-series alignment
  ☆10Updated 3 years ago
• rkms86 / SUSAN
  ☆10Updated last month
• KudryashevLab / TomoBEAR
  TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…
  ☆28Updated 3 weeks ago
• juglab / cryoCARE_pip
  PIP package of cryoCARE
  ☆32Updated last year
• logicvay2010 / TomoNet
  TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing
  ☆17Updated last week
• cellcanvas / surforama
  a tool for using surfaces to explore volumetric data in napari
  ☆16Updated 5 months ago
• MPI-Dortmund / cryolo
  cryolo documentation
  ☆9Updated last year
• cryo-et-standards / cryoet-geometry
  A possible schema for cryoET geometry metadata
  ☆10Updated 3 months ago
• SMLC-NYSBC / TARDIS
  Transformer And Rapid Dimensionless Instance Segmentation
  ☆14Updated last month
• CellArchLab / MemBrain
  ☆31Updated last year
• wan-lab-vanderbilt / TOMOMAN
  A set of MATLAB wrapper scripts to help with pre-processing of tomography data.
  ☆19Updated 8 months ago
• czimaginginstitute / AreTomo3
  Live processing and real time reconstruction of cryo
  ☆26Updated this week