Alternatives and similar repositories for scNodes

Users that are interested in scNodes are comparing it to the libraries listed below

• teamtomo / mdocfile
  SerialEM mdoc files as pandas dataframes
  ☆14Updated 4 months ago
• ZauggGroup / DeePiCt
  Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…
  ☆39Updated last year
• teamtomo / imodmodel
  IMOD model files as pandas dataframes in Python
  ☆11Updated 5 months ago
• GrotjahnLab / surface_morphometrics
  Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.
  ☆28Updated last month
• sklumpe / SerialFIB
  A Modular Platform for Streamlining Automated Cryo-FIB Workflows
  ☆25Updated 9 months ago
• juglab / cryoCARE_T2T
  Singularity image for cryo-CARE
  ☆37Updated 3 years ago
• anmartinezs / pyseg_system
  De novo analysis for cryo-electron tomography
  ☆24Updated last year
• carsonpurnell / cryotomosim_CTS
  cryo-EM tomogram simulator
  ☆29Updated this week
• hanjinliu / cylindra
  Fourier analysis and subtomogram averaging of heterogenic cylindrical structures
  ☆14Updated last week
• rsanchezgarc / micrograph_cleaner_em
  Cryo-EM micrograph segmentation through deep learning
  ☆22Updated 2 months ago
• cellcanvas / surforama
  a tool for using surfaces to explore volumetric data in napari
  ☆19Updated 7 months ago
• tomotools / tomotools
  Scripts to make cryo-electron tomography a bit easier
  ☆14Updated 4 months ago
• KudryashevLab / TomoBEAR
  TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…
  ☆28Updated 5 months ago
• brisvag / blik
  Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
  ☆28Updated last week
• alisterburt / autoalign_dynamo
  automated on-the-fly tilt-series alignment
  ☆11Updated 4 years ago
• bionanopatterning / Ais
  ☆23Updated last week
• builab / subtomo2Chimera
  ☆19Updated 3 weeks ago
• SMLC-NYSBC / TARDIS
  Transformer And Rapid Dimensionless Instance Segmentation
  ☆18Updated last month
• Zuber-group / CryoVesNet
  segmentation of spherical vesicles in cryo-electron tomography
  ☆11Updated last year
• alisterburt / napari-mrcfile-reader
  Read MRC format image files into napari using the mrcfile package from CCP-EM
  ☆19Updated last year
• CellArchLab / MemBrain
  ☆33Updated 2 years ago
• rkms86 / SUSAN
  ☆10Updated last month
• juglab / cryoCARE_pip
  PIP package of cryoCARE
  ☆42Updated last year
• cryoem-uoft / cryosparc2_public
  CryoSPARC is the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data. The …
  ☆13Updated 3 months ago
• leschzinerlab / Motion-correction
  Scripts for aligning cryo-electron microscopy direct electron detector movies on whole movies or individual particle trajectories
  ☆12Updated 8 years ago
• DeMarcoLab / autolamella
  autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.
  ☆19Updated 4 months ago
• jianglab / motioncorr
  motion correction for movies recorded using direct electron detectors
  ☆14Updated 8 years ago
• czimaginginstitute / AreTomo2
  ☆50Updated last year
• rosalindfranklininstitute / parakeet
  Phantom generator
  ☆23Updated 4 months ago
• turonova / novaCTF
  3D-CTF correction for cryo-electron tomography
  ☆27Updated 7 years ago