Alternatives and similar repositories for scNodes:

Users that are interested in scNodes are comparing it to the libraries listed below

• juglab / cryoCARE_T2T
  Singularity image for cryo-CARE
  ☆29Updated 3 years ago
• KosinskiLab / colabseg
  Jupyter-based tool for membrane segmentation manipulation
  ☆9Updated 8 months ago
• ZauggGroup / DeePiCt
  Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…
  ☆31Updated 11 months ago
• GrotjahnLab / surface_morphometrics
  Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.
  ☆22Updated this week
• bionanopatterning / Ais
  ☆13Updated last week
• brisvag / blik
  Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
  ☆23Updated last month
• sklumpe / SerialFIB
  A Modular Platform for Streamlining Automated Cryo-FIB Workflows
  ☆21Updated 2 months ago
• anmartinezs / pyseg_system
  De novo analysis for cryo-electron tomography
  ☆20Updated 2 months ago
• teamtomo / libtilt
  Image processing for cryo-electron microscopy in PyTorch
  ☆14Updated 7 months ago
• rsanchezgarc / micrograph_cleaner_em
  Cryo-EM micrograph segmentation through deep learning
  ☆20Updated last month
• alisterburt / napari-mrcfile-reader
  Read MRC format image files into napari using the mrcfile package from CCP-EM
  ☆18Updated 8 months ago
• SMLC-NYSBC / TARDIS
  Transformer And Rapid Dimensionless Instance Segmentation
  ☆11Updated this week
• carsonpurnell / cryotomosim_CTS
  cryo-EM tomogram simulator
  ☆20Updated this week
• czimaginginstitute / GCtfFind
  GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series
  ☆23Updated 6 months ago
• alisterburt / autoalign_dynamo
  automated on-the-fly tilt-series alignment
  ☆10Updated 3 years ago
• builab / subtomo2Chimera
  ☆18Updated last month
• KudryashevLab / TomoBEAR
  TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…
  ☆27Updated 9 months ago
• DeMarcoLab / autolamella
  autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.
  ☆19Updated this week
• juglab / cryoCARE_pip
  PIP package of cryoCARE
  ☆28Updated 9 months ago
• alan-turing-institute / affinity-vae
  Self-supervised method for disentanglement, clustering and classification of objects in multidimensional image data
  ☆14Updated 5 months ago
• rkms86 / SUSAN
  ☆10Updated 2 months ago
• SBC-Utrecht / PyTom
  PyTom software for cryo-tomogram processing
  ☆37Updated 4 months ago
• teamtomo / imodmodel
  IMOD model files as pandas dataframes in Python
  ☆9Updated last month
• cellcanvas / surforama
  a tool for using surfaces to explore volumetric data in napari
  ☆16Updated last month
• NIEHS / SmartScope
  SmartScope is a framework for systematic evaluation of cryo-EM specimens
  ☆15Updated this week
• alisterburt / dynamo2emClarity
  A tool for conversion between subtomogram averaging softwares Dynamo and emClarity
  ☆9Updated 5 years ago
• nysbc / appion-protomo
  A Docker-based distribution of Appion-Protomo.
  ☆11Updated 4 years ago
• rosalindfranklininstitute / parakeet
  Phantom generator
  ☆19Updated this week
• cellcanvas / cellcanvas
  A tool to support interactive machine learning for cryoET data
  ☆11Updated 4 months ago
• KosinskiLab / pyTME
  ☆23Updated 4 months ago