Alternatives and similar repositories for CellTracker

Users that are interested in CellTracker are comparing it to the libraries listed below

• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆42Updated 4 years ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆33Updated 2 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆57Updated 3 weeks ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 2 years ago
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D time lapse images.
  ☆61Updated this week
• AiviaCommunity / 3D-RCAN
  Three-dimensional residual channel attention networks
  ☆54Updated 2 years ago
• funkelab / linajea
  ☆18Updated 2 years ago
• marrlab / BaSiC
  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
  ☆61Updated 5 months ago
• LabTrivedi / MOrgAna
  ☆29Updated 7 months ago
• Cao-ruijie / Dark-sectioning
  This is the supplementary code for Dark sectioning. And it is private now
  ☆33Updated 2 months ago
• divelab / deepem3d
  ☆17Updated 7 years ago
• deepimagej / deepimagej-plugin
  The ImageJ plugin to run deep-learning models
  ☆98Updated last month
• peterhpark / neuroclear
  Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded ax…
  ☆30Updated 5 months ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 6 months ago
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆39Updated last year
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆56Updated last month
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆40Updated 4 months ago
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆74Updated 4 months ago
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆115Updated last week
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 11 months ago
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated last week
• imodpasteur / ANNA-PALM
  Accelerating Single Molecule Localization Microscopy with Deep Learning
  ☆51Updated 2 years ago
• maweigert / neubias_academy_stardist
  ☆31Updated 4 years ago
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆83Updated last week
• Kapoorlabs-CAPED / NapaTrackMater
  Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.
  ☆17Updated 2 weeks ago
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆20Updated 2 years ago