🤝 Tool for mining KEGG pathways completeness data from eggNOG-mapper annotations
☆28Jan 7, 2026Updated 2 months ago
Alternatives and similar repositories for KEGGaNOG
Users that are interested in KEGGaNOG are comparing it to the libraries listed below
Sorting:
- Pipeline for eukaryotic genome annotation based on external evidences☆14Feb 23, 2023Updated 3 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- 🎆 ✨ Wrapper around fireworks-js to bring fireworks to your Shiny application☆10Dec 16, 2024Updated last year
- ☆17Nov 18, 2025Updated 3 months ago
- Python3 Read Until API implementation☆11Mar 11, 2020Updated 5 years ago
- Install micromamba, and optionally create a base conda environment.☆10Apr 5, 2025Updated 11 months ago
- A Cloud Pipeline to Analyze Long Read Sequencing Data from Oxford Nanopore and PacBio Sequencers☆12Jan 30, 2023Updated 3 years ago
- Slides and example code for debugging {targets} pipelines☆10Apr 17, 2025Updated 10 months ago
- Mortality data for Mexico, along with useful extra data☆14Jan 14, 2011Updated 15 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆12Feb 17, 2025Updated last year
- ComfyUI Dia text to speech☆14May 29, 2025Updated 9 months ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- ☆18Dec 11, 2024Updated last year
- A cloud-polling Home Assistant component to integrate with an Evnex Charger☆24Feb 14, 2026Updated 3 weeks ago
- ☆12Apr 8, 2021Updated 4 years ago
- PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding☆11Mar 31, 2021Updated 4 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated 11 months ago
- Example of Shinylive application deployed on GitHub Pages☆13Oct 14, 2022Updated 3 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Oct 12, 2023Updated 2 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Oct 1, 2021Updated 4 years ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Oct 5, 2021Updated 4 years ago
- Official Ansible playbook for installing Netdata.☆18Dec 9, 2024Updated last year
- Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA☆13Jul 25, 2024Updated last year
- an example of building up a targets analysis for -omics data☆12Jun 23, 2023Updated 2 years ago
- A multiscale pangenome browser☆28Updated this week
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Feb 2, 2022Updated 4 years ago
- Do microbiome analysis with dada2 and phyloseq object☆14Oct 9, 2024Updated last year
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆121Jan 22, 2025Updated last year
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Feb 17, 2022Updated 4 years ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆15Aug 28, 2024Updated last year
- Convert QIIME files into Oligotyping subsets.☆15Dec 10, 2014Updated 11 years ago
- This repository contains our data and R code for our article on computational text analysis of racism in archaeology.☆12Jun 23, 2023Updated 2 years ago
- A tool to find and visualize rearrangements in DNA sequences☆16Sep 16, 2019Updated 6 years ago
- A Xojo/python tool for identification and annotation of transcription factor binding sites in bacterial genomes☆19Jan 16, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information☆42Feb 25, 2026Updated last week
- This package contains Perl programs/scripts that perform frequently needed operations on FASTA format files.☆16Apr 25, 2025Updated 10 months ago