🤝 Tool for mining KEGG pathways completeness data from eggNOG-mapper annotations
☆38Jun 5, 2026Updated last week
Alternatives and similar repositories for KEGGaNOG
Users that are interested in KEGGaNOG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for eukaryotic genome annotation based on external evidences☆14Feb 23, 2023Updated 3 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding☆11Mar 31, 2021Updated 5 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆11Oct 12, 2023Updated 2 years ago
- 🎆 ✨ Wrapper around fireworks-js to bring fireworks to your Shiny application☆10Mar 8, 2026Updated 3 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Manipulate KEGG networks as NetworkX objects in in Python☆10Jan 21, 2022Updated 4 years ago
- ☆12Apr 8, 2021Updated 5 years ago
- Second edition of "Primer of Ecology with R"☆22Nov 9, 2023Updated 2 years ago
- ☆22Dec 11, 2024Updated last year
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Oct 5, 2021Updated 4 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆14Oct 1, 2021Updated 4 years ago
- A multiscale pangenome browser☆30Apr 24, 2026Updated last month
- A newly developed metabolic modeling pipeline, SuperCC, which could simulate the performances of different microbiomes.☆27Nov 21, 2025Updated 6 months ago
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆29Jun 11, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python package to run DefensePredictor, a machine learning model to identify proteins involved in anti-phage defense☆53Apr 27, 2026Updated last month
- A script for comparing old vs new versions of genome annotations☆23Aug 1, 2023Updated 2 years ago
- Eukaryotic genome annotation software.☆26Jun 10, 2026Updated last week
- PowerBacGWAS: Power calculations for Bacterial GWAS☆14Feb 2, 2022Updated 4 years ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated last year
- Plant small RNA target prediction tool☆27Dec 19, 2016Updated 9 years ago
- ☆19Nov 26, 2020Updated 5 years ago
- Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support☆23Sep 13, 2023Updated 2 years ago
- Rapid & standardized genome annotation using protein structural information☆68Jun 12, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This package contains Perl programs/scripts that perform frequently needed operations on FASTA format files.☆16Apr 25, 2025Updated last year
- Useful tools for working with Salmon output☆37Jun 24, 2020Updated 5 years ago
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆24Jun 5, 2026Updated 2 weeks ago
- A Xojo/python tool for identification and annotation of transcription factor binding sites in bacterial genomes☆19Jan 16, 2026Updated 5 months ago
- A Cytoscape app for importing KGML(KEGG pathway XML)☆26Mar 13, 2026Updated 3 months ago
- Generate interactive dotplot from mummer4 output using plotly☆27Feb 29, 2020Updated 6 years ago
- ☆28Feb 19, 2025Updated last year
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆122May 29, 2026Updated 2 weeks ago
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆16May 14, 2023Updated 3 years ago
- ☆23Jul 9, 2019Updated 6 years ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆35Oct 17, 2023Updated 2 years ago
- Install micromamba, and optionally create a base conda environment.☆10Apr 5, 2025Updated last year
- "NA Figure": visualization of the missing data distribution☆15Sep 1, 2023Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆22Apr 20, 2023Updated 3 years ago
- Talk to the NCBI EUtils☆23Oct 8, 2020Updated 5 years ago