LiveCoMS GROMACS Tutorials Paper
☆138Jun 28, 2019Updated 6 years ago
Alternatives and similar repositories for gmx_tutorials_livecoms
Users that are interested in gmx_tutorials_livecoms are comparing it to the libraries listed below
Sorting:
- GridMAT-MD membrane analysis program☆25Sep 15, 2018Updated 7 years ago
- Tools, tutorials, and wiki for GROMACS☆20Jul 21, 2020Updated 5 years ago
- molecular dynamics simulation and analysis. 分子动力学模拟和分析。☆41Oct 3, 2019Updated 6 years ago
- tools for GROMACS☆141Jul 11, 2025Updated 7 months ago
- Repository of the gromacstutorials webpage☆14Jan 23, 2026Updated last month
- An open tool implementing some recommended practices for analyzing alchemical free energy calculations☆135May 24, 2024Updated last year
- GromacsWrapper wraps system calls to GROMACS tools into thin Python classes (GROMACS 4.6.5 - 2024 supported).☆185Sep 4, 2025Updated 5 months ago
- OFFICIAL: AnteChamber PYthon Parser interfacE☆245Feb 18, 2026Updated last week
- Sample inputs and tutorial for GROMACS-2022/CP2K QMMM interface☆42Jan 29, 2026Updated last month
- SMolSAT.py: Soft-Matter Molecular Simulation Analysis Toolkit☆15Dec 17, 2024Updated last year
- Data and script of Umbrella Sampling for molecular transmembrane☆14Jun 21, 2024Updated last year
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆65Nov 26, 2025Updated 3 months ago
- Gromacs Topology Files for common Ionic Liquids☆24Jan 24, 2026Updated last month
- Scripts, inputs and the results generated as part of the training the Sage line of OpenFF force fields.☆21Jun 30, 2025Updated 8 months ago
- Analysis of non-covalent interactions in MD trajectories☆67Jan 3, 2025Updated last year
- Some GROMACS tutorials using methane and water☆15Dec 7, 2016Updated 9 years ago
- Dockerfile for GROMACS☆52Jun 29, 2023Updated 2 years ago
- Home of the public Martini 3 lipid parameters☆19Sep 29, 2025Updated 5 months ago
- This software package simulates the reduction of graphene oxide and calculates the optical response of the generated sp2 domains☆11Dec 22, 2016Updated 9 years ago
- This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.☆28Oct 1, 2020Updated 5 years ago
- LIGSIFT: An open-source tool for ligand structural alignment and virtual screening☆15Mar 4, 2018Updated 7 years ago
- Some collected tools for molecular simulation pipelines☆43Aug 18, 2018Updated 7 years ago
- MDAnalysis is a Python library to analyze molecular dynamics simulations.☆1,540Feb 19, 2026Updated last week
- This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universit…☆93Jan 29, 2026Updated last month
- Public/backup repository of the GROMACS molecular simulation toolkit. Please do not mine the metadata blindly; we use https://gitlab.com/…☆870Updated this week
- Resources for the BioML Challenge 2024: Bits to Binders☆18Aug 24, 2024Updated last year
- Gromacs molecular dynamics simulation analysis scripts☆10Apr 5, 2022Updated 3 years ago
- A tool to draw Graphene Oxide 3D chemical structures. (Python 2.7)☆11Nov 27, 2017Updated 8 years ago
- Gromacs topology template generator☆15Jul 15, 2021Updated 4 years ago
- ☆29May 5, 2025Updated 9 months ago
- ☆11Aug 30, 2020Updated 5 years ago
- ☆11Jan 21, 2019Updated 7 years ago
- A fork of Autodock Vina for DeltaVina scoring function☆10Nov 7, 2016Updated 9 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- Dynamics PyMOL Plugin☆48Apr 19, 2024Updated last year
- Python code for learning Molecular Dynamics simulations☆53Dec 4, 2020Updated 5 years ago
- Development version of plumed 2☆483Feb 23, 2026Updated last week
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆169Feb 12, 2026Updated 2 weeks ago
- ☆19Feb 6, 2017Updated 9 years ago