jalemkul / gmx_tutorials_livecomsLinks
LiveCoMS GROMACS Tutorials Paper
☆134Updated 6 years ago
Alternatives and similar repositories for gmx_tutorials_livecoms
Users that are interested in gmx_tutorials_livecoms are comparing it to the libraries listed below
Sorting:
- Describe and apply transformation on molecular structures and topologies☆130Updated 3 weeks ago
- OFFICIAL: AnteChamber PYthon Parser interfacE☆241Updated 6 months ago
- tools for GROMACS☆132Updated 5 months ago
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆164Updated 4 months ago
- Martini 3 small molecule database☆68Updated 2 months ago
- PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.☆162Updated 3 weeks ago
- INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems☆73Updated last year
- GromacsWrapper wraps system calls to GROMACS tools into thin Python classes (GROMACS 4.6.5 - 2024 supported).☆183Updated 3 months ago
- Trusted force field files for gromacs☆65Updated last year
- Yasara plugins for Gromacs users☆32Updated last year
- (outdated) fork of https://gitlab.com/gromacs/gromacs☆53Updated 2 years ago
- A repository containing the build steps for the ccpbiosim workshop on QM/MM☆68Updated last week
- OpenMM tutorial for the MSBS course☆180Updated last week
- clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)☆123Updated last year
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆67Updated 4 years ago
- ☆126Updated last year
- The pDynamo molecular modeling and simulation program☆43Updated last month
- binding free energy estimator 2☆135Updated 3 weeks ago
- ☆59Updated 2 weeks ago
- Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates☆178Updated last week
- LOOS: a lightweight object-oriented structure analysis library☆126Updated 2 months ago
- A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations …☆117Updated 7 years ago
- An open tool implementing some recommended practices for analyzing alchemical free energy calculations☆134Updated last year
- Software for biomolecular electrostatics and solvation calculations☆120Updated last year
- OpenMM plugin to interface with PLUMED☆73Updated last month
- Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation☆134Updated 2 years ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆89Updated 5 months ago
- A python toolkit for analysing membrane protein-lipid interactions.☆68Updated 2 months ago
- OpenMM-based framework for absolute and relative binding free energy calculations with the Alchemical Transfer Method☆145Updated 3 weeks ago
- Force fields produced by the Open Force Field Initiative☆174Updated last month