huw-morris-lab / imputationLinks
Imputation steps using the Michigan or Sanger imputation server.
☆15Updated 4 years ago
Alternatives and similar repositories for imputation
Users that are interested in imputation are comparing it to the libraries listed below
Sorting:
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 3 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆31Updated last year
- LDlinkR☆59Updated last year
- ☆35Updated 4 years ago
- Make LocusZoom-like plots with your own LD matrix.☆40Updated 2 years ago
- corrplot of LDSC genetic correlation results☆51Updated 3 years ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆19Updated 2 years ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆50Updated 4 years ago
- Main ricopili repo for public releases☆48Updated last month
- Partners Biobank genomics data QC☆26Updated 5 years ago
- Sequence kernel association test (SKAT)☆50Updated 3 months ago
- Visualization of Colocalization Between eQTL and GWAS Data☆84Updated 3 years ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆67Updated 7 months ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆50Updated 3 weeks ago
- ☆16Updated last week
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆63Updated 7 months ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆45Updated last year
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆29Updated last year
- Regional association plots☆25Updated last year
- Genotype-based Prediction (GenoPred)☆72Updated 2 weeks ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 7 years ago
- Software for estimating correlation of trait effect sizes across populations☆46Updated last week
- Colocalization analysis of genetic association signals☆53Updated 3 weeks ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆93Updated 3 months ago
- GWAS for survival analysis in large cohorts☆21Updated 10 months ago
- ☆16Updated 2 years ago
- Reading, querying and writing GWAS summary data in VCF format☆80Updated last year
- Meta-analysis of genomewide association scans☆56Updated 10 months ago
- LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.☆115Updated 2 years ago
- R package for quality control of plink genetic datasets☆59Updated last week