huw-morris-lab / imputationLinks
Imputation steps using the Michigan or Sanger imputation server.
☆16Updated 4 years ago
Alternatives and similar repositories for imputation
Users that are interested in imputation are comparing it to the libraries listed below
Sorting:
- LDlinkR☆63Updated last year
- ☆16Updated 2 years ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆70Updated last year
- Codes for our NPNT paper at Nature Metabolism☆16Updated last year
- FOCUS: Fine-mapping Of CaUsal gene Sets☆48Updated 2 years ago
- R package for quality control of plink genetic datasets☆63Updated last month
- Software implementing the Latent Causal Variable Model☆64Updated 5 years ago
- Reading, querying and writing GWAS summary data in VCF format☆92Updated last month
- ☆18Updated 5 months ago
- gwasrapidd: an R package to query, download and wrangle GWAS Catalog data☆100Updated 7 months ago
- Genetics ToolboX R package☆32Updated 5 years ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆20Updated 4 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Updated 6 months ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆54Updated 2 months ago
- ☆35Updated 2 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 3 years ago
- Visualise correlation results and test significancies of these☆23Updated 5 years ago
- Make LocusZoom-like plots with your own LD matrix.☆48Updated 3 years ago
- LASSO for GWAS with summary statistics☆78Updated 5 years ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆97Updated 10 months ago
- ☆18Updated 8 years ago
- Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper☆18Updated 2 years ago
- Regional association plots☆26Updated last year
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆38Updated last year
- ☆50Updated 2 weeks ago
- ☆32Updated 5 years ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆26Updated 4 years ago
- Colocalization analysis of genetic association signals☆53Updated 6 months ago
- Regional association plots☆24Updated last year
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆52Updated 9 months ago