huw-morris-lab / imputation
Imputation steps using the Michigan or Sanger imputation server.
☆14Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for imputation
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆61Updated last month
- Colocalization analysis of genetic association signals☆47Updated this week
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆49Updated last month
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆17Updated 2 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆29Updated 10 months ago
- Make LocusZoom-like plots with your own LD matrix.☆38Updated 2 years ago
- ☆33Updated 3 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- LDlinkR☆56Updated 7 months ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆47Updated last month
- Sequence kernel association test (SKAT)☆42Updated last year
- Harmonise GWAS summary statistics against a reference VCF☆40Updated 3 years ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆40Updated 3 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆40Updated 6 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- corrplot of LDSC genetic correlation results☆47Updated 2 years ago
- Statistical tools for Quantitative Genetic Analyses☆34Updated this week
- Partners Biobank genomics data QC☆25Updated 4 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆32Updated 4 years ago
- ☆32Updated last year
- Regional association plots☆25Updated 7 months ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆23Updated 3 years ago
- A collection of various utilities for GWAS summary statistics☆26Updated 6 months ago
- GWAS for survival analysis in large cohorts☆19Updated 3 months ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆22Updated 4 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆91Updated last week
- package for the causal TWAS project☆38Updated this week
- Hypothesis Prioritisation in multi-trait Colocalization☆47Updated 7 months ago
- QTL Discovery using Annotations☆23Updated last year