Imputation steps using the Michigan or Sanger imputation server.
☆16May 6, 2021Updated 5 years ago
Alternatives and similar repositories for imputation
Users that are interested in imputation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Applying polygenic scores (PGS) on imputed genotypes☆36Oct 28, 2025Updated last year
- An R package for creating mirrored Manhattan plots☆19Sep 30, 2022Updated 4 years ago
- Download UKB bulk data☆11Jul 27, 2020Updated 6 years ago
- SNp Exploration and Analysis using EPigenomics data☆12Oct 15, 2026Updated 2 weeks ago
- eVITTA: an easy Visualization and Inference Toolbox for Transcriptome Analysis☆12Mar 23, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Statistical fine-mapping pipeline in FinnGen☆35Aug 14, 2026Updated 2 months ago
- Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data☆19May 28, 2021Updated 5 years ago
- R package of useful functions for one-sample Mendelian randomization and instrumental variable analyses☆27Oct 23, 2026Updated last week
- ☆11Feb 14, 2023Updated 3 years ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆75Oct 10, 2024Updated 2 years ago
- ☆31Oct 26, 2026Updated last week
- Part1: fastq and bam processing and quality check. Part2: variant calling, filtering and annotation☆12Feb 2, 2024Updated 2 years ago
- Rscripts collection for ploting in daily research life☆10Jan 15, 2021Updated 5 years ago
- Nanopore sequencing-based episignature detection☆19Jun 10, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Convert GWAS summary statistics to VCF☆49Apr 13, 2026Updated 6 months ago
- Docker Image for Michigan Imputation Server☆18Oct 12, 2021Updated 5 years ago
- Scripts for running a sibling GWAS☆16Mar 16, 2022Updated 4 years ago
- An R package of Tukey inspired exploratory data analysis functions☆12Jun 5, 2026Updated 4 months ago
- R notebooks for the code samples of the book "Deep Learning with R"☆22Sep 19, 2018Updated 8 years ago
- ☆14Jun 15, 2022Updated 4 years ago
- Introduction to Snakemake for Bioinformatics☆22Updated this week
- UCSC liftOver (genome build converter) for vcf format☆12Nov 29, 2017Updated 8 years ago
- ☆20Jan 4, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated last year
- Script used to identify de novo variants from sequencing data.☆12Mar 2, 2017Updated 9 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆15Jul 2, 2025Updated last year
- genetic correlation between phenotypes in the UK biobank☆15Feb 22, 2024Updated 2 years ago
- ☆12Apr 26, 2020Updated 6 years ago
- GENome Organisation Visual Analytics☆16Dec 24, 2021Updated 4 years ago
- ☆15Apr 20, 2021Updated 5 years ago
- Web version of GenomeRunner☆11Nov 6, 2016Updated 9 years ago
- Data logistics system enabling real-time pathogen surveillance. Built for the Seattle Flu Study.☆22Dec 6, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An AI Approach Alternative to Animal Studies – a Case Study with Toxicogenomics☆17Oct 13, 2022Updated 4 years ago
- GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…☆37Updated this week
- To reveal the cellular heterogeneity within flow cytometry data, clustering and pseudotime analysis can be performed. Here, we demonstrat…☆14Jul 5, 2022Updated 4 years ago
- The package is developed for treatment recommendation & pairwise treatment individual effect estimation (ITE/CATE/HTE) when multiple trea…☆11Mar 9, 2023Updated 3 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆17Jun 28, 2021Updated 5 years ago
- 📘 The official starter package for student theses @ LMU Media Informatics Group.☆13Nov 9, 2025Updated 11 months ago
- An accurate and efficient HLA imputation method.☆27Mar 16, 2023Updated 3 years ago