huw-morris-lab / imputation
Imputation steps using the Michigan or Sanger imputation server.
☆15Updated 3 years ago
Alternatives and similar repositories for imputation:
Users that are interested in imputation are comparing it to the libraries listed below
- LDlinkR☆58Updated 11 months ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- ☆34Updated 4 years ago
- Sequence kernel association test (SKAT)☆46Updated last month
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆47Updated 4 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆57Updated 5 months ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆18Updated 2 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆31Updated last year
- Analyses conducting GWAS across the UKBB diverse superpopulations☆50Updated 5 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 6 years ago
- corrplot of LDSC genetic correlation results☆50Updated 3 years ago
- A collection of various utilities for GWAS summary statistics☆27Updated 10 months ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆66Updated 5 months ago
- Reading, querying and writing GWAS summary data in VCF format☆77Updated 11 months ago
- Regional association plots☆25Updated 11 months ago
- Make LocusZoom-like plots with your own LD matrix.☆39Updated 2 years ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 3 years ago
- Visualization of Colocalization Between eQTL and GWAS Data☆80Updated 2 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆28Updated 9 months ago
- ☆32Updated last year
- Colocalization analysis of genetic association signals☆51Updated 4 months ago
- Statistical tools for Quantitative Genetic Analyses☆36Updated last week
- R package for quality control of plink genetic datasets☆58Updated 2 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆33Updated 3 years ago
- Hypothesis Prioritisation in multi-trait Colocalization☆52Updated 11 months ago
- Software for estimating correlation of trait effect sizes across populations☆44Updated 2 years ago
- Regional association plots☆26Updated 11 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- ☆26Updated 3 years ago