mdozmorov / genomerunner_web
Web version of GenomeRunner
☆11Updated 8 years ago
Alternatives and similar repositories for genomerunner_web:
Users that are interested in genomerunner_web are comparing it to the libraries listed below
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 7 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆68Updated 3 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆46Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- ATAC-seq lab for BIOINF545☆25Updated 2 months ago
- ☆38Updated 5 years ago
- Links to ATAC-seq analysis tools☆65Updated 3 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 3 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- ☆44Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ATAC-seq processing pipeline☆32Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆55Updated 12 years ago
- Scripts to recreate figures from the SC3 paper☆40Updated 8 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago