hugang123 / DxyLinks
Caculate the genetic distance of Dxy(like Fst) between the two populations form the vcf file .
☆8Updated 6 years ago
Alternatives and similar repositories for Dxy
Users that are interested in Dxy are comparing it to the libraries listed below
Sorting:
- ☆16Updated 3 years ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated 9 months ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- Sex assignment through coverage☆19Updated 2 months ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Ancestral flowering plant genomes reconstruction☆13Updated 2 years ago
- ☆12Updated 5 years ago
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- Calculate Hybrid Index and Heterozygosity from SNP data☆10Updated 3 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- ☆21Updated 2 years ago
- Deleterious mutation prediction pipeline☆13Updated 7 months ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Updated 5 years ago
- Software package for estimating fine-scale recombination rate.☆16Updated 4 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆17Updated last year
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆12Updated 5 years ago
- ☆12Updated last month
- ☆12Updated 2 years ago
- SNP/Genotype calling based on ANGSD && downstream analyses☆9Updated 10 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆25Updated 3 weeks ago
- ☆12Updated 5 years ago
- ☆15Updated 9 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- ☆12Updated 2 years ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14Updated last year
- Automated pipeline for running CoalHMM☆13Updated last year
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆11Updated 2 years ago
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆15Updated last year
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆10Updated last month