covid19kg / Analysis
Simple analyses and tutorials on the COVID-19 Knowledge Graph
☆14Updated 4 years ago
Alternatives and similar repositories for Analysis:
Users that are interested in Analysis are comparing it to the libraries listed below
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆44Updated 3 years ago
- ☆55Updated 4 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- Biomedical Relation Extraction with Knowledge Graph-based Recommendations☆9Updated last year
- Method for drug repurposing from knowledge graphs and literature☆34Updated 4 years ago
- Drug repurposing for COVID-19 using literature-based discovery☆27Updated 2 years ago
- A Knowledge Graph for Relational Learning On Biological Data☆94Updated last year
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Updated last year
- Grounding of biomedical named entities with contextual disambiguation☆43Updated this week
- ☆19Updated 4 years ago
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆62Updated this week
- A Python package for drug discovery by analyzing causal paths on multiscale networks☆26Updated 8 months ago
- 📊 Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Know…☆35Updated 2 years ago
- ☆66Updated last year
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆33Updated 7 months ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- Build PharMeBINet from different sources.☆15Updated 3 weeks ago
- A python implementation of the Ensemble Biclustering for Classification (EBC) algorithm. EBC is a co-clustering algorithm that allows you…☆20Updated 7 years ago
- Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆40Updated this week
- ☆10Updated 4 years ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆17Updated 2 weeks ago
- Bi-Level Graph Neural Networks for Drug-Drug Interaction Prediction. ICML 2020 Graph Representation Learning and Beyond (GRL+) Workshop☆29Updated 4 years ago
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆10Updated last year
- [Bioinformatics 2021] This is the repo for the paper `SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summa…☆85Updated 8 months ago
- a module to calculate the MeSH similarity☆26Updated 3 years ago
- Convert Description Logic axioms into a graph, and generate embedding representation for the nodes.☆19Updated 2 years ago
- ☆63Updated 5 years ago
- Software "Disease_ontologies_for_knowledge_graphs" - a knowledge base solution that uses Grakn core and disease ontologies cross-referenc…☆21Updated 3 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆58Updated last year
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆149Updated 10 months ago