covid19kg / AnalysisLinks
Simple analyses and tutorials on the COVID-19 Knowledge Graph
☆14Updated 5 years ago
Alternatives and similar repositories for Analysis
Users that are interested in Analysis are comparing it to the libraries listed below
Sorting:
- ☆57Updated 4 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆44Updated 4 years ago
- A Knowledge Graph for Relational Learning On Biological Data☆106Updated last year
- Method for drug repurposing from knowledge graphs and literature☆35Updated 5 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆152Updated last year
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated 3 months ago
- ☆64Updated 5 years ago
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆11Updated last year
- ☆68Updated 2 years ago
- [Bioinformatics 2021] This is the repo for the paper `SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summa…☆87Updated last year
- A Python package for drug discovery by analyzing causal paths on multiscale networks☆27Updated last year
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Ten quick tips to finish that manuscript that's 90% complete.☆13Updated 3 years ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Updated last year
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆34Updated last month
- ☆19Updated 5 years ago
- Bi-Level Graph Neural Networks for Drug-Drug Interaction Prediction. ICML 2020 Graph Representation Learning and Beyond (GRL+) Workshop☆30Updated 4 years ago
- A graph-based deep learning framework for life science☆122Updated 2 years ago
- Hetionet: an integrative network of disease☆299Updated 2 years ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆18Updated last month
- Don't worry about DrugBank licensing - write code that knows how to download it automatically☆55Updated 6 months ago
- Convert Description Logic axioms into a graph, and generate embedding representation for the nodes.☆19Updated 2 years ago
- 📊 Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Know…☆36Updated 3 years ago
- ☆16Updated 3 years ago
- Build PharMeBINet from different sources.☆19Updated last week
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of…☆236Updated 3 months ago
- SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Scientific Reports)☆64Updated 5 years ago
- Drug repurposing for COVID-19 using literature-based discovery☆28Updated 2 years ago