lfurrer / bconvLinks
Python library for converting between BioNLP formats
☆21Updated 2 years ago
Alternatives and similar repositories for bconv
Users that are interested in bconv are comparing it to the libraries listed below
Sorting:
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- ☆73Updated last year
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- ☆90Updated 5 years ago
- Conversion from brat-flavored standoff to CoNLL format☆52Updated 4 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42Updated 5 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆168Updated last year
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 5 years ago
- Entity Linking & discovery solution. Agarwal et al., "Entity Linking via Explicit Mention-Mention Coreference Modeling", NAACL 2022.☆27Updated last year
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆19Updated 3 years ago
- ☆25Updated 2 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 3 years ago
- ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching☆29Updated 2 years ago
- Code for AttentionMeSH☆17Updated 6 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 5 years ago
- Training data for the NLPContributionGraph Shared Task 11 at SemEval-2021☆14Updated 4 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated 3 months ago
- A system for normalizing disorder mentions in biomedical data.☆19Updated 9 years ago
- Using pretrained language models for biomedical knowledge graph completion.☆47Updated 3 years ago
- Repository used to collect biomedical corpus on the Internet!☆35Updated 4 years ago
- Tools for working with the S800 corpus☆11Updated 4 years ago
- NCBI disease corpus - related resources☆29Updated 8 years ago
- Identifying Historical People, Places and other Entities: Shared Task on Named Entity Recognition and Linking on Historical Newspapers at…☆22Updated 10 months ago
- BioCreative-V CDR Corpus☆27Updated 6 years ago