Alternatives and similar repositories for AutoBioNER:

Users that are interested in AutoBioNER are comparing it to the libraries listed below

• isegura / DDICorpus
  ☆35Updated 4 years ago
• udel-biotm-lab / BERT-CLRE
  ☆24Updated 3 years ago
• GanjinZero / KeBioLM
  Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]
  ☆65Updated 2 years ago
• danlou / MedLinker
  ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching
  ☆29Updated last year
• haiya1994 / BERE
  ☆50Updated 2 years ago
• lasigeBioTM / BiOnt
  BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
  ☆26Updated last year
• BaderLab / Biomedical-Corpora
  A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…
  ☆36Updated 6 years ago
• Andy-jqa / AttnMeSH
  Code for AttentionMeSH
  ☆17Updated 6 years ago
• tigerchen52 / Biomedical-Entity-Linking
  A Keras implementation of the AAAI21 paper "a lightweight neural model for biomedical entity linking"
  ☆53Updated 2 years ago
• chanzuckerberg / ChemDisGene
  Bio relation extraction labeled dataset
  ☆44Updated 2 years ago
• bionlp-hzau / BioNLP-Corpus
  Repository used to collect biomedical corpus on the Internet!
  ☆32Updated 4 years ago
• usmaann / BioALBERT
  Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT
  ☆28Updated 3 years ago
• hu-ner / huner
  Named Entity Recognition for biomedical entities
  ☆47Updated 2 years ago
• CongSun-dlut / CPI_extraction
  CPI Extraction
  ☆9Updated 2 years ago
• ncbi / bert_gt
  ☆32Updated last year
• laituan245 / bio_relex
  Joint Biomedical Entity and Relation Extraction with Knowledge-Enhanced Collective Inference
  ☆40Updated 2 years ago
• Yuanhy1997 / GenBioEL
  Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning [NAACL 2022]
  ☆18Updated 2 years ago
• yuzhimanhua / Multi-BioNER
  Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)
  ☆134Updated 8 months ago
• insilicomedicine / Fair-Evaluation-BERT
  ☆18Updated 3 years ago
• suamin / MIL-RBERT
  MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
  ☆19Updated last year
• wonjininfo / CollaboNet
  CollaboNet for Biomedical Named Entity Recognition
  ☆48Updated 6 years ago
• Alibaba-NLP / EBM-Net
  Codes for the EMNLP'2020 paper "Predicting Clinical Trial Results by Implicit Evidence Integration".
  ☆14Updated 4 years ago
• PlusLabNLP / GEANet-BioMed-Event-Extraction
  Code for the paper Biomedical Event Extraction with Hierarchical Knowledge Graphs
  ☆61Updated 2 years ago
• laituan245 / rescnn_bioel
  ☆25Updated last year
• heyunh2015 / diseaseBERT
  Code and dataset of EMNLP 2020 paper "Infusing Disease Knowledge into BERT for Health Question Answering, Medical Inference and Disease N…
  ☆68Updated 3 years ago
• wglassly / cnnormaliztion
  For icibm paper
  ☆11Updated 8 years ago
• dongfang91 / Generate-and-Rank-ConNorm
  Generate-and-Rank Framework with Semantic Type Regularization for Biomedical Concept Normalization
  ☆25Updated 4 years ago
• kingsaint / BioMedical-EL
  Fast and Effective Biomedical Entity Linking Using a Dual Encoder
  ☆19Updated 2 years ago
• dmis-lab / BioLAMA
  EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?
  ☆56Updated 2 years ago
• klimzaporojets / e2e-kb-ie
  Implementation of our paper "Injecting Knowledge Base Information into End-to-End Joint Entity and Relation Extraction and Coreference Re…
  ☆10Updated 3 years ago