hclimente / smartas
πNotebook of Climente-GonzΓ‘lez et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
β14Updated 6 years ago
Alternatives and similar repositories for smartas:
Users that are interested in smartas are comparing it to the libraries listed below
- Differential Count Data Analysis Toolboxβ61Updated last year
- β34Updated 8 years ago
- Data and analysis for the Splatter paperβ28Updated 7 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomesβ22Updated last month
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.β26Updated 8 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.β22Updated 6 years ago
- Analysis for svaseq paperβ19Updated 10 years ago
- β41Updated 6 years ago
- Tutorials covering various topics in genomic data analysis.β16Updated 6 years ago
- TSIS: an R package to infer time-series isoform switch of alternative splicingβ3Updated last year
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"β19Updated 5 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screensβ22Updated 5 years ago
- β60Updated 4 years ago
- ChIP-seq DC and QC Pipelineβ34Updated 3 years ago
- Python module for the easy handling and analysis of DNase-seq dataβ37Updated 5 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipelineβ21Updated 3 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic dataβ40Updated 2 years ago
- Statistical power studies for multi-omics experiments.β30Updated last month
- Transcript quantification import with automatic metadata detectionβ67Updated 3 weeks ago
- Explore the cancer relevance of your gene listβ49Updated 5 months ago
- An R client for broads firehose pipeline, providing TCGA data setsβ60Updated 5 years ago
- Code and simulations using biologically annotated neural networksβ21Updated 3 years ago
- Lightweight Iterative Gene set Enrichment in Rβ57Updated 4 months ago
- Preprocessing of single-cell RNA-Seq (deprecated)β62Updated 5 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.β35Updated last year
- β40Updated 6 years ago
- gkmSVM R packageβ17Updated 7 years ago
- scRNAseq integration with triplet neural networksβ40Updated 2 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)β28Updated 9 years ago
- Single-CELL rna-seq analysis software