hclimente / smartasLinks
📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
☆14Updated 7 years ago
Alternatives and similar repositories for smartas
Users that are interested in smartas are comparing it to the libraries listed below
Sorting:
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- ☆35Updated 8 years ago
- TSIS: an R package to infer time-series isoform switch of alternative splicing☆3Updated 2 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 4 months ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- gkmSVM R package☆17Updated 7 years ago
- ☆61Updated 4 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- Extracting disease-specific genomic coordinates from GWAS catalog☆21Updated 5 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆11Updated 6 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆60Updated 5 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 7 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Analysis for svaseq paper☆19Updated 10 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 5 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago