hclimente / smartas
📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
☆14Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for smartas
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- TSIS: an R package to infer time-series isoform switch of alternative splicing☆3Updated last year
- ☆34Updated 8 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆22Updated 3 weeks ago
- gkmSVM R package☆17Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last week
- ☆60Updated 4 years ago
- ☆41Updated 6 years ago
- Explore the cancer relevance of your gene list☆49Updated 2 months ago
- Statistical power studies for multi-omics experiments.☆30Updated last year
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆21Updated 3 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 6 years ago
- Differential Count Data Analysis Toolbox☆60Updated 9 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 2 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆61Updated 3 years ago
- RNA-Seq pipeline☆34Updated 9 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆60Updated 5 years ago
- Bioinformatics for Benched Biologists☆22Updated 4 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆31Updated 10 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- Data and analysis for the Splatter paper☆28Updated 6 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Proteome-Wide Association Study☆42Updated 3 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆12Updated 5 years ago