Efficient protein domain annotation search with reduced amino acid k-mers
☆12Oct 21, 2026Updated last week
Alternatives and similar repositories for kmerseek
Users that are interested in kmerseek are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🌊 Robust workflows for gathering data about your local ocean.☆14Jul 19, 2023Updated 3 years ago
- A Python interface to the Ensembl REST APIs, biological data at your fingertips.☆11Apr 17, 2024Updated 2 years ago
- Fast FASTA indexing, extraction, validation, and stats in a few MB of memory for any file size. One static binary and a Zig package; hand…☆16Oct 15, 2026Updated last week
- A modular pipeline for constructing Pathway/Genome Databases from environmental sequence information☆13Apr 4, 2025Updated last year
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆64Mar 25, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- "Rewriting protein alphabets with language models"☆26Updated this week
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆13Sep 19, 2017Updated 9 years ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 4 years ago
- Normalization methods for RNA-Seq expression data in Python.☆11Jan 7, 2015Updated 11 years ago
- A universal genomic coordinate translator for comparative genomics☆12Jul 6, 2017Updated 9 years ago
- A basic R Shiny app to visualize the play-by-play data from the NHL☆13Nov 14, 2015Updated 10 years ago
- Build phylogenomic datasets in seconds☆15Updated this week
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- ☆19Jul 9, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆19Sep 13, 2025Updated last year
- Converting genomic sequence data to tensor-valued orthogonal polynomials and projecting phenotypes onto sequence space.☆18Apr 2, 2025Updated last year
- Find nodes in hierarchical clustering that are statistically significant☆32Oct 15, 2017Updated 9 years ago
- Code base for profiling highly replicated differential gene expression RNA-seq.☆11Dec 13, 2021Updated 4 years ago
- User-friendly tool to quickly go from 16S rRNA sequence data to an OTU matrix☆10Apr 16, 2014Updated 12 years ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆31Oct 14, 2026Updated 2 weeks ago
- ☆11Jan 4, 2025Updated last year
- A minimal and serverless data pipeline☆13Feb 22, 2022Updated 4 years ago
- ☆22Jul 4, 2017Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- bleeding edge (python) packages...☆15Nov 22, 2015Updated 10 years ago
- The Nifty GNU Sequence Library☆11May 28, 2013Updated 13 years ago
- Measure research software reach without hand-counting the internet. Dated snapshots, legit totals, grant-ready reports.☆26Oct 1, 2026Updated 3 weeks ago
- ☆19Aug 25, 2026Updated 2 months ago
- A tool that lauches docker jobs on Amazon EC2.☆10May 7, 2019Updated 7 years ago
- A R Bioconductor package for accessing MyGene.info services☆12Jun 22, 2018Updated 8 years ago
- UCSD Scientific Python User Group☆13Oct 30, 2014Updated 11 years ago
- The MHC Restriction Ontology☆14Oct 20, 2026Updated last week
- Generation of sequence-level annotations for amino acid sequences☆15Oct 8, 2026Updated 2 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Wrapper integrating Mri and caffe-cnn☆10Jul 25, 2016Updated 10 years ago
- Homology-based ANI estimation at unprecedented scales🦀☆25Oct 4, 2026Updated 3 weeks ago
- Compressed, associative, and exact hash table for k-mers☆11Oct 15, 2026Updated last week
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆45Sep 17, 2021Updated 5 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆12Dec 11, 2019Updated 6 years ago
- waka waka☆18Mar 18, 2021Updated 5 years ago
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago