h3abionet / h3agatkLinks
☆21Updated 5 years ago
Alternatives and similar repositories for h3agatk
Users that are interested in h3agatk are comparing it to the libraries listed below
Sorting:
- ☆82Updated 7 years ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- ☆96Updated 3 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- ☆78Updated 11 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- ☆83Updated 3 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Documentation and description of AWS iGenomes S3 resource.☆119Updated last year
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- An awk-like VCF parser☆56Updated last year
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 8 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- Galaxy RNA workbench☆41Updated 5 years ago
- Genomic Interactive Visualization Engine☆146Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 3 months ago
- Next-Generation Sequencing(NGS) toolkits.☆48Updated 9 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆104Updated 6 months ago
- R package designed to simplify structural variant analysis☆74Updated 4 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- ABRA2☆95Updated 3 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆84Updated last week
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- Software program for checking sample matching for NGS data☆137Updated last year