A Python Framework for Modeling and Analysis of Signaling Systems
☆29May 25, 2026Updated 2 weeks ago
Alternatives and similar repositories for biomass
Users that are interested in biomass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15May 30, 2023Updated 3 years ago
- A Python toolbox for COPASI☆13Jun 5, 2024Updated 2 years ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated 2 months ago
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆43Jun 7, 2026Updated last week
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Dec 15, 2025Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 3 months ago
- Computational framework for dataset integration☆11Jul 21, 2023Updated 2 years ago
- ChEMBL Database used to create Lipinski Descriptors (ADME Pharmokinetic Profile) to use in a Random Forest Regression Model☆15Nov 8, 2020Updated 5 years ago
- A simplified python interface to COPASI.☆28Mar 19, 2026Updated 2 months ago
- A repository to host extended examples and tutorials.☆11Dec 17, 2025Updated 5 months ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆129Updated this week
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Mar 9, 2026Updated 3 months ago
- JBrowse 2 plugin for editing annotations on an Apollo server☆15May 29, 2026Updated 2 weeks ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆12May 16, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Web app for automated, systematic, and integrated RNA-seq differential expression analysis☆15May 1, 2026Updated last month
- Scripts used in the paper "Control of cell state transitions" by Rukhlenko et al.☆15May 4, 2022Updated 4 years ago
- ☆17May 5, 2026Updated last month
- 📝 Preview Asciidoctor in real-time with neovim/Vim.☆10Dec 19, 2023Updated 2 years ago
- Fully featured & enhanced replacement for copilot.vim complete with API for interacting with Github Copilot☆11Nov 19, 2024Updated last year
- Registry of containerized biosimulation tools that support a standard command-line interface☆15May 28, 2026Updated 2 weeks ago
- python Parameter EStimation TOolbox☆273Updated this week
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆11Nov 13, 2024Updated last year
- ☆23Jul 14, 2023Updated 2 years ago
- ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network☆22Mar 24, 2026Updated 2 months ago
- Biologically-informed neural networks☆43Dec 3, 2020Updated 5 years ago
- Benchmark for learning stiff problems using physics-informed machine learning☆13Dec 15, 2021Updated 4 years ago
- ☆15Sep 14, 2019Updated 6 years ago
- Netflux is a user-friendly software for developing dynamic computational models of biological networks. Models are created in Excel forma…☆33Jan 9, 2025Updated last year
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆63Mar 27, 2026Updated 2 months ago
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Jun 13, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Use Neovim as a language server to inject LSP diagnostics, code actions, and more via Lua.☆16Sep 19, 2023Updated 2 years ago
- Model selection for PEtab☆14Updated this week
- A python library for the analysis of chemical reaction networks.☆22Oct 21, 2022Updated 3 years ago
- Tool suite for kappa models. Documentation and binaries can be found in the release section. Try it online at☆127May 22, 2026Updated 3 weeks ago
- A Machine Learning Classifier for Lung & Colon Cancer Histopathological Images.☆19Jun 21, 2022Updated 3 years ago
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 4 months ago
- Enhance your Neovim experience with AI-powered coding assistance. Seamlessly integrate a Large Language Model into your workflow for smar…☆19Mar 8, 2025Updated last year