biomass-dev / biomass

Related projects: ⓘ

• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆26Updated 7 months ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆106Updated 4 months ago
• biosimulations / biosimulations
  A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
  ☆38Updated this week
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆21Updated last month
• okadalabipr / intro_to_param_estim
  Parameter estimation of ODE models describing biological processes
  ☆10Updated 4 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆59Updated 2 months ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆76Updated this week
• pasmopy / pasmopy
  Patient-Specific Modeling in Python
  ☆18Updated last month
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆14Updated last year
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated last year
• cytoscape / py4cytoscape
  Python library for calling Cytoscape Automation via CyREST
  ☆69Updated 2 weeks ago
• taborlab / FlowCal
  Python Flow Cytometry Calibration Library
  ☆48Updated 2 months ago
• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆38Updated 2 years ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆91Updated 3 weeks ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆22Updated 9 months ago
• alubbock / thunor
  Dose response curves and DIP rates for cell proliferation data in Python
  ☆14Updated last week
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 4 years ago
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆165Updated 2 months ago
• MunskyGroup / FISH_Processing
  Repository to automatically process ​Fluorescence In Situ Hybridization (FISH) images using Cellpose and BIG-FISH (FISH-quant v2).
  ☆13Updated this week
• mfitzp / theolb
  The Open Lab Book: A collection of freely distributable scientific protocols
  ☆26Updated 4 years ago
• copasi / basico
  A simplified python interface to COPASI.
  ☆19Updated 3 weeks ago
• biocircuits / bioscrape
  BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
  ☆19Updated 2 months ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆82Updated last month
• BioSystemsUM / troppo
  Reconstruction algorithms for Python
  ☆22Updated last month
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆92Updated last year
• cytoflow / cytoflow
  A Python toolbox for quantitative, reproducible flow cytometry analysis
  ☆170Updated 3 weeks ago
• vivarium-collective / vivarium-core
  Core Interface and Engine for Vivarium
  ☆23Updated 4 months ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆134Updated 2 months ago
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆207Updated 3 months ago
• vindelorme / PlateEditor
  Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis
  ☆19Updated last year