📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology
☆32Dec 16, 2019Updated 6 years ago
Alternatives and similar repositories for doctoral-thesis
Users that are interested in doctoral-thesis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Mar 2, 2021Updated 5 years ago
- 📖 A review of KGEM packages and frameworks at https://pykeen.github.io/kgem-software-review.☆12Jun 24, 2024Updated last year
- Harmonizing pathway databases using Biological Expression Language (BEL)☆20Jul 1, 2024Updated last year
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Nov 3, 2021Updated 4 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Jul 10, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- 📊 Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Know…☆36Apr 19, 2022Updated 3 years ago
- Simple analyses and tutorials on the COVID-19 Knowledge Graph☆14Apr 27, 2020Updated 5 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆61Updated this week
- 🐸 Idiomatic conversion between URIs and compact URIs (CURIEs) in Python☆25Mar 16, 2026Updated last week
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated last year
- Grounding of biomedical named entities with contextual disambiguation☆49Feb 13, 2026Updated last month
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…☆18Mar 2, 2026Updated 3 weeks ago
- A knowledge resource on cell lines - From SIB CALIPHO group☆14Jan 31, 2024Updated 2 years ago
- PyTorch code of “Out-of-Sample Representation Learning for Multi-Relational Graphs” (EMNLP 2020)☆10Oct 2, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆75Mar 15, 2026Updated 2 weeks ago
- PyCTD is a Python software package to query and analyse data from the CTD database☆12Oct 6, 2022Updated 3 years ago
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆142Updated this week
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆96Oct 3, 2023Updated 2 years ago
- An automated workflow to create disease-specific Knowledge Graphs☆22Updated this week
- 🔍 Lookup classes and instantiate them with style☆68Mar 9, 2026Updated 2 weeks ago
- Babel creates cliques of equivalent identifiers across many biomedical vocabularies.☆14Mar 22, 2026Updated last week
- 👁️🗨️ Scientists often do the same bad stuff. Automate giving deterministic feedback during peer review with determinstic (LLM-free)☆30May 9, 2025Updated 10 months ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Mar 19, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.☆17Jul 9, 2024Updated last year
- development and intrinsic evaluation of drug related word embeddings using PubMed abstracts and DrugBank☆14Feb 3, 2017Updated 9 years ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Dec 15, 2025Updated 3 months ago
- Python utilities for SBML☆41Jan 22, 2026Updated 2 months ago
- (Multiblock) Partial Least Squares Regression for Python☆33Jan 14, 2020Updated 6 years ago
- Read RDS files, in Python☆27Updated this week
- migrates from swat-4-med-safety/SW-DDI-catalog/drug-drug-interactions☆39Oct 2, 2017Updated 8 years ago
- Knowledge Graph Embeddings learned from the structure and literals of knowledge graphs☆44Jun 21, 2022Updated 3 years ago
- Cursos y talleres sobre matemática, computación y estadística☆11Dec 13, 2025Updated 3 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- 🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.☆40Sep 29, 2025Updated 6 months ago
- Functions for scraping git commits from repositories associated with a PhD (or anything else) and plotting them.☆30Aug 14, 2019Updated 6 years ago
- INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and datab…☆205Mar 17, 2026Updated last week
- 🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.☆44Jan 8, 2026Updated 2 months ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Apr 2, 2024Updated last year
- Code for the paper "Query Embedding on Hyper-relational Knowledge Graphs"☆33May 18, 2024Updated last year
- Pynocular is a lightweight ORM that lets you query your database using Pydantic models and asyncio☆12May 24, 2022Updated 3 years ago