๐ Generation and Applications of Knowledge Graphs in Systems and Networks Biology
โ33Dec 16, 2019Updated 6 years ago
Alternatives and similar repositories for doctoral-thesis
Users that are interested in doctoral-thesis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Network representation learning on drug-target-side effects-indication graphs for side effect predictionโ13Feb 4, 2020Updated 6 years ago
- ๐ A review of KGEM packages and frameworks at https://pykeen.github.io/kgem-software-review.โ12Jun 24, 2024Updated last year
- Harmonizing pathway databases using Biological Expression Language (BEL)โ20Jul 1, 2024Updated last year
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)โ21Nov 3, 2021Updated 4 years ago
- Transforming SemRep Predications into an Open Biomedical Linked Data Resourceโ11Jan 26, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient โข AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.โ18Mar 26, 2026Updated 2 months ago
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ62May 6, 2026Updated 3 weeks ago
- ๐ธ Idiomatic conversion between URIs and compact URIs (CURIEs) in Pythonโ27May 7, 2026Updated 3 weeks ago
- The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology (DIDEO)โ15Oct 25, 2023Updated 2 years ago
- PyBioPAX: A python implementation of the BioPAX object modelโ27May 10, 2024Updated 2 years ago
- A knowledge resource on cell lines - From SIB CALIPHO groupโ14Jan 31, 2024Updated 2 years ago
- PyTorch code of โOut-of-Sample Representation Learning for Multi-Relational Graphsโ (EMNLP 2020)โ10Oct 2, 2020Updated 5 years ago
- Goslin is the Grammar on succinct lipid nomenclature.โ13Apr 29, 2026Updated last month
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ76May 21, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI โข AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their ownโฆโ19May 22, 2026Updated last week
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ143May 21, 2026Updated last week
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologiesโ96Oct 3, 2023Updated 2 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila melaโฆโ10Sep 25, 2019Updated 6 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiologyโ43Jul 5, 2021Updated 4 years ago
- ๐ Lookup classes and instantiate them with styleโ68Apr 13, 2026Updated last month
- Babel creates cliques of equivalent identifiers across many biomedical vocabularies.โ14Updated this week
- ๐๏ธโ๐จ๏ธ Scientists often do the same bad stuff. Automate giving deterministic feedback during peer review with determinstic (LLM-free)โ30May 9, 2025Updated last year
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ33Mar 19, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail โข AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- development and intrinsic evaluation of drug related word embeddings using PubMed abstracts and DrugBankโ14Feb 3, 2017Updated 9 years ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.โ21Dec 15, 2025Updated 5 months ago
- First pass at a thin wrapper around the Monarch API and ChatGPT pluginโ12Mar 21, 2025Updated last year
- Python utilities for SBMLโ41Apr 23, 2026Updated last month
- HiView: the universal viewer for hierarchical dataโ16Mar 23, 2023Updated 3 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.โ13Mar 5, 2021Updated 5 years ago
- Read RDS files, in Pythonโ28May 18, 2026Updated last week
- migrates from swat-4-med-safety/SW-DDI-catalog/drug-drug-interactionsโ39Oct 2, 2017Updated 8 years ago
- โy0 (pronounced "why not?") is for causal inference in Pythonโ71Updated this week
- 1-Click AI Models by DigitalOcean Gradient โข AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Knowledge Graph Embeddings learned from the structure and literals of knowledge graphsโ44Jun 21, 2022Updated 3 years ago
- โ16Jun 11, 2017Updated 8 years ago
- ๐ Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.โ40Sep 29, 2025Updated 8 months ago
- Functions for scraping git commits from repositories associated with a PhD (or anything else) and plotting them.โ30Aug 14, 2019Updated 6 years ago
- ๐ Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.โ44Jan 8, 2026Updated 4 months ago
- GENome Organisation Visual Analyticsโ16Dec 24, 2021Updated 4 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automaticallyโ41Apr 2, 2024Updated 2 years ago