๐ Generation and Applications of Knowledge Graphs in Systems and Networks Biology
โ33Dec 16, 2019Updated 6 years ago
Alternatives and similar repositories for doctoral-thesis
Users that are interested in doctoral-thesis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python package for benchmarking pathway database with functional enrichment and classification methodsโ13Mar 2, 2021Updated 5 years ago
- ๐ A review of KGEM packages and frameworks at https://pykeen.github.io/kgem-software-review.โ12Jun 24, 2024Updated 2 years ago
- Harmonizing pathway databases using Biological Expression Language (BEL)โ20Jul 1, 2024Updated 2 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)โ22Nov 3, 2021Updated 4 years ago
- ๐ถ๏ธ An ecosystem in Python for working with the Biological Expression Language (BEL)โ139Jul 2, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean โข AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Transforming SemRep Predications into an Open Biomedical Linked Data Resourceโ11Jan 26, 2018Updated 8 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.โ18Mar 26, 2026Updated 4 months ago
- ๐ Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Knowโฆโ36Apr 19, 2022Updated 4 years ago
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ64Jul 16, 2026Updated last week
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)โ10Dec 14, 2020Updated 5 years ago
- The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology (DIDEO)โ16Oct 25, 2023Updated 2 years ago
- PyBioPAX: A python implementation of the BioPAX object modelโ27May 10, 2024Updated 2 years ago
- Grounding of biomedical named entities with contextual disambiguationโ54Jun 29, 2026Updated last month
- PyCTD is a Python software package to query and analyse data from the CTD databaseโ12Oct 6, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer โข AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their ownโฆโ19Jul 9, 2026Updated 2 weeks ago
- A knowledge resource on cell lines - From SIB CALIPHO groupโ14Jan 31, 2024Updated 2 years ago
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ75Jul 7, 2026Updated 3 weeks ago
- PyTorch code of โOut-of-Sample Representation Learning for Multi-Relational Graphsโ (EMNLP 2020)โ10Oct 2, 2020Updated 5 years ago
- Goslin is the Grammar on succinct lipid nomenclature.โ14Jun 18, 2026Updated last month
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ146Updated this week
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologiesโ99Oct 3, 2023Updated 2 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila melaโฆโ10Sep 25, 2019Updated 6 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiologyโ43Jul 5, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer โข AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ๐ Lookup classes and instantiate them with styleโ68Apr 13, 2026Updated 3 months ago
- ๐๏ธโ๐จ๏ธ Scientists often do the same bad stuff. Automate giving deterministic feedback during peer review with determinstic (LLM-free)โ32May 9, 2025Updated last year
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ34Mar 19, 2024Updated 2 years ago
- A Python package for drug discovery by analyzing causal paths on multiscale networksโ28Jul 1, 2024Updated 2 years ago
- A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.โ17Jul 9, 2024Updated 2 years ago
- First pass at a thin wrapper around the Monarch API and ChatGPT pluginโ12Mar 21, 2025Updated last year
- development and intrinsic evaluation of drug related word embeddings using PubMed abstracts and DrugBankโ14Feb 3, 2017Updated 9 years ago
- Lecture notes for research skills courseโ15Feb 6, 2023Updated 3 years ago
- migrates from swat-4-med-safety/SW-DDI-catalog/drug-drug-interactionsโ39Oct 2, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways โข AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Knowledge Graph Embeddings learned from the structure and literals of knowledge graphsโ44Jun 21, 2022Updated 4 years ago
- โ16Jun 11, 2017Updated 9 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automaticallyโ43Jun 19, 2026Updated last month
- INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databโฆโ215Jun 30, 2026Updated 3 weeks ago
- Introduction to Algorithmsโ13Jun 22, 2019Updated 7 years ago
- ๐ค A Python Package for generating new patient representations driven by data and prior knowledgeโ24Oct 24, 2025Updated 9 months ago
- GENome Organisation Visual Analyticsโ16Dec 24, 2021Updated 4 years ago