๐ Generation and Applications of Knowledge Graphs in Systems and Networks Biology
โ33Dec 16, 2019Updated 6 years ago
Alternatives and similar repositories for doctoral-thesis
Users that are interested in doctoral-thesis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Network representation learning on drug-target-side effects-indication graphs for side effect predictionโ13Feb 4, 2020Updated 6 years ago
- Harmonizing pathway databases using Biological Expression Language (BEL)โ20Jul 1, 2024Updated 2 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)โ22Nov 3, 2021Updated 4 years ago
- ๐ถ๏ธ An ecosystem in Python for working with the Biological Expression Language (BEL)โ139Jul 2, 2026Updated 2 months ago
- Transforming SemRep Predications into an Open Biomedical Linked Data Resourceโ11Jan 26, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer โข AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Simple analyses and tutorials on the COVID-19 Knowledge Graphโ14Apr 27, 2020Updated 6 years ago
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ66Sep 18, 2026Updated last week
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)โ10Dec 14, 2020Updated 5 years ago
- PyBioPAX: A python implementation of the BioPAX object modelโ27May 10, 2024Updated 2 years ago
- Grounding of biomedical named entities with contextual disambiguationโ56Jun 29, 2026Updated 2 months ago
- PyCTD is a Python software package to query and analyse data from the CTD databaseโ12Oct 6, 2022Updated 3 years ago
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their ownโฆโ22Jul 9, 2026Updated 2 months ago
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ76Updated this week
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ152Updated this week
- AI Agents on DigitalOcean Gradient AI Platform โข AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologiesโ100Oct 3, 2023Updated 2 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila melaโฆโ10Sep 25, 2019Updated 7 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiologyโ43Jul 5, 2021Updated 5 years ago
- ๐ธ Idiomatic conversion between URIs and compact URIs (CURIEs) in Pythonโ28Updated this week
- ๐ Lookup classes and instantiate them with styleโ68Updated this week
- ๐๏ธโ๐จ๏ธ Scientists often do the same bad stuff. Automate giving deterministic feedback during peer review with determinstic (LLM-free)โ32May 9, 2025Updated last year
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ34Mar 19, 2024Updated 2 years ago
- A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.โ17Jul 9, 2024Updated 2 years ago
- development and intrinsic evaluation of drug related word embeddings using PubMed abstracts and DrugBankโ14Feb 3, 2017Updated 9 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits โข AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- HiView: the universal viewer for hierarchical dataโ16Mar 23, 2023Updated 3 years ago
- Lecture notes for research skills courseโ15Feb 6, 2023Updated 3 years ago
- Knowledge Graph Embeddings learned from the structure and literals of knowledge graphsโ44Jun 21, 2022Updated 4 years ago
- โ16Jun 11, 2017Updated 9 years ago
- INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databโฆโ224Jun 30, 2026Updated 2 months ago
- ๐ Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.โ41Sep 29, 2025Updated 11 months ago
- Introduction to Algorithmsโ13Jun 22, 2019Updated 7 years ago
- ๐ค A Python Package for generating new patient representations driven by data and prior knowledgeโ22Oct 24, 2025Updated 11 months ago
- ๐ Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.โ44Jan 8, 2026Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer โข AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code for the paper "Query Embedding on Hyper-relational Knowledge Graphs"โ33May 18, 2024Updated 2 years ago
- OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.โ103Jan 11, 2024Updated 2 years ago
- This repository presents a global overview of why GitHub, and especially Git+R should be used by everyone, helping for reproducibility. Tโฆโ19Jun 12, 2025Updated last year
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the Nโฆโ22Aug 9, 2016Updated 10 years ago
- LA-PDFText is a system for extracting accurate text from PDF-based research articles (and an interface to be able to improve performance โฆโ15Mar 21, 2019Updated 7 years ago
- โ21Mar 28, 2024Updated 2 years ago
- Aligner for sequencing dataโ18Apr 20, 2026Updated 5 months ago