cthoyt / doctoral-thesisLinks
๐ Generation and Applications of Knowledge Graphs in Systems and Networks Biology
โ29Updated 5 years ago
Alternatives and similar repositories for doctoral-thesis
Users that are interested in doctoral-thesis are comparing it to the libraries listed below
Sorting:
- A project to capture biological pathway data from academic papersโ29Updated 5 months ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.โ18Updated last year
- Harmonizing pathway databases using Biological Expression Language (BEL)โ20Updated last year
- ๐ช What's the latest version for each database?โ27Updated this week
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)โ21Updated 3 years ago
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)โ10Updated 4 years ago
- โ24Updated 4 years ago
- A knowledge resource on cell lines - From SIB CALIPHO groupโ14Updated last year
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ57Updated last month
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ72Updated last week
- Draft cell type definitions from data - candidates for inclusion in CLโ12Updated last month
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://giโฆโ45Updated 2 years ago
- Faultless AST for Open Biomedical Ontologies in Python.โ30Updated 3 months ago
- A Python package for benchmarking pathway database with functional enrichment and classification methodsโ13Updated 4 years ago
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,โฆโ24Updated 2 weeks ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposingโ32Updated 7 years ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.govโ27Updated 9 years ago
- API for linked biological knowledgeโ65Updated 3 years ago
- PyBioPAX: A python implementation of the BioPAX object modelโ24Updated last year
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ133Updated this week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)โ38Updated last week
- Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.โ14Updated 2 years ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologiesโ18Updated 6 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.โ65Updated 3 months ago
- ๐ Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.โ42Updated last year
- Similarity search in heterogeneous knowledge graphs using meta paths.โ27Updated 2 years ago
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX dataโ13Updated 3 years ago
- Ontology cross-reference and mapping serviceโ19Updated 3 months ago
- OntoBrowser is a web-based application for managing ontologiesโ43Updated 2 years ago
- Connect the dots in networks.โ19Updated 4 years ago