Alternatives and similar repositories for doctoral-thesis

Users that are interested in doctoral-thesis are comparing it to the libraries listed below

• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• sorgerlab / famplex
  Resources for grounding protein families and complexes from text and describing their hierarchical relationships.
  ☆18Updated 11 months ago
• fastobo / fastobo-py
  Faultless AST for Open Biomedical Ontologies in Python.
  ☆29Updated last month
• PROconsortium / PRoteinOntology
  ☆15Updated this week
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated this week
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆55Updated this week
• gyorilab / indra_db
  A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…
  ☆17Updated last week
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆19Updated 11 months ago
• biolink / biolink-model-toolkit
  A collection of useful python functions for looking up information and working with the Biolink Model
  ☆24Updated this week
• seffnet / seffnet
  Network representation learning on drug-target-side effects-indication graphs for side effect prediction
  ☆13Updated 5 years ago
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated 5 months ago
• OntoGene / OGER
  ☆24Updated 4 years ago
• ncats / stitcher
  A stitching platform for InXight
  ☆15Updated 2 months ago
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 3 months ago
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆69Updated last week
• AstraZeneca / skywalkR-graph-features
  Example notebooks that illustrate how to generate knowledge-based features. Features can be used in a variety of ML models, including rec…
  ☆11Updated 3 years ago
• EBISPOT / OXO
  Ontology cross-reference and mapping service
  ☆19Updated last month
• bio2bel / drugbank
  A Bio2BEL package for DrugBank (https://www.drugbank.ca)
  ☆9Updated 4 years ago
• opentargets / OnToma
  Map your disease and phenotype terms to the Open Targets platform ontology
  ☆21Updated this week
• monarch-initiative / monarchr
  R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.
  ☆14Updated 2 weeks ago
• geneontology / helpdesk
  The Gene Ontology Helpdesk
  ☆16Updated 4 months ago
• biocypher / project-template
  Template for creating a BioCypher-driven knowledge graph
  ☆12Updated 3 weeks ago
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• GuiltyTargets / guiltytargets
  Target prioritization using network representation learning
  ☆11Updated 3 years ago
• esacinc / PDC-Public
  The public repository for the Proteomic Data Commons UI and APIs
  ☆14Updated last year
• calipho-sib / cellosaurus
  A knowledge resource on cell lines - From SIB CALIPHO group
  ☆14Updated last year
• michaelkyu / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆18Updated 6 years ago
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆35Updated this week
• unmtransinfo / TCRD
  Code to build the Target Central Resource Database (TCRD).
  ☆10Updated 3 years ago
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 4 years ago