gyorilab / adeftLinks
Tool for disambiguating acronyms and abbreviations in text for NLP applications
☆22Updated last year
Alternatives and similar repositories for adeft
Users that are interested in adeft are comparing it to the libraries listed below
Sorting:
- Grounding of biomedical named entities with contextual disambiguation☆44Updated last month
- Multimodal Transformers for biomedical text and Knowledge Graph data☆34Updated 2 years ago
- spaCy pipeline component for generating spaCy KnowledgeBase Alias Candidates for Entity Linking☆85Updated 2 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 5 years ago
- A convolutional neural network model for relation extraction.☆13Updated 2 years ago
- Text annotation tool for team collaboration☆41Updated last year
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- Biomedical Data-to-Text Generation via Fine-Tuning Transformers☆28Updated 3 years ago
- The Plumber framework for KG completion and structured triples extraction☆21Updated 2 years ago
- Python library for converting between BioNLP formats☆21Updated 2 years ago
- ☆73Updated last year
- Tutorial and hands-on notebook on using the Knowledge Graph Toolkit (KGTK)☆80Updated 2 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Updated last year
- ☆15Updated 3 years ago
- This repository contains the code accompanying the paper "Learning Informative Representations of Biomedical Relations with Latent Variab…☆14Updated 3 years ago
- ☆67Updated 3 years ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆19Updated 3 years ago
- The corresponding code for our paper: A sequence-to-sequence approach for document-level relation extraction.☆63Updated last year
- Data structures and code to read/write BioC XML and Json.☆33Updated last year
- BioELECTRA☆50Updated 3 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- MTab: Entity Search and Table Annotation with Wikidata, Wikipedia, and DBpedia☆31Updated 3 years ago
- Medical Relations and Entities Extraction☆36Updated 3 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- Knowledge graphs generation from unstructured text.☆71Updated 4 months ago
- Cross-domain data integration for named entity disambiguation in biomedical text☆11Updated 3 years ago
- Using pretrained language models for biomedical knowledge graph completion.☆47Updated 3 years ago
- Keeping It Simple is Hard☆10Updated last year