Alternatives and similar repositories for biomaRt:

Users that are interested in biomaRt are comparing it to the libraries listed below

• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆49Updated 5 years ago
• jokergoo / rGREAT
  GREAT Analysis - Functional Enrichment on Genomic Regions
  ☆86Updated this week
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated last year
• UMMS-Biocore / debrowser
  Differential Count Data Analysis Toolbox
  ☆61Updated last year
• sonali-bioc / UncertaintyRNA
  This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…
  ☆28Updated last year
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆24Updated 10 months ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆49Updated 4 months ago
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 3 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆36Updated 2 months ago
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated last year
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆59Updated 3 months ago
• andreasmock / MetaboDiff
  ☆30Updated 4 years ago
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 5 years ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated last month
• MRCIEU / metaboprep
  a pipeline of metabolomics data processing and quality control
  ☆25Updated 11 months ago
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆20Updated last year
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆28Updated 2 months ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last month
• oganm / geneSynonym
  Quick access to gene synonyms
  ☆26Updated last week
• metaOmics / metaOmics
  Shiny GUI application for genomics meta-analysis
  ☆21Updated 4 years ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆56Updated last month
• neurogenomics / orthogene
  🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 �…
  ☆42Updated last year
• sirselim / illumina450k_filtering
  A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
  ☆30Updated last year
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆49Updated this week
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated 7 months ago
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆35Updated 6 years ago
• ssayols / rrvgo
  Reduce + Visualize Gene Ontology
  ☆24Updated 3 months ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆56Updated last year
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆33Updated 2 months ago
• alserglab / phantasus
  Visual exploratory analysis of gene expression data
  ☆43Updated 2 weeks ago