A hidden Markov model for detecting segments of shared ancestry (identity by descent)
☆14Dec 15, 2023Updated 2 years ago
Alternatives and similar repositories for hmmIBD
Users that are interested in hmmIBD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simulating Plasmodium Epidemiological and Genetic Data☆12Apr 3, 2023Updated 3 years ago
- ARG-Needle library for representing and analyzing ancestral recombination graphs (ARGs)☆10Nov 21, 2025Updated 11 months ago
- ☆14Mar 7, 2021Updated 5 years ago
- HybridCheck, an R package for quickly scripting scans of sequence data for recombination regions.☆15Jan 28, 2022Updated 4 years ago
- ☆12Mar 16, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A reimplementation of a classical PSMC method in python for educational purposes☆17Jul 22, 2024Updated 2 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- Automatically exported from code.google.com/p/macs☆17Oct 17, 2019Updated 7 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated 2 years ago
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"☆15Sep 10, 2018Updated 8 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 6 years ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆21Feb 6, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Sep 11, 2025Updated last year
- Ejemplo de Repositorio Open Data en github☆12May 1, 2013Updated 13 years ago
- ☆12Aug 15, 2026Updated 2 months ago
- Evaluating high order derivative tensors directly via reverse mode AD in Cpp.☆10May 11, 2017Updated 9 years ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆16Jul 30, 2026Updated 3 months ago
- SpokeDarts sphere-packing sampling in any dimension. Advancing front sampling from radial lines (spokes) through prior samples.☆10Aug 4, 2021Updated 5 years ago
- K-mer counting algorithms and count-data utilities for the BioJulia framework☆11Apr 23, 2023Updated 3 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆36May 6, 2026Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 9 years ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 8 months ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13May 12, 2022Updated 4 years ago
- R package for analysis of hybrids and hybrid zones☆22Sep 23, 2026Updated last month
- An automatic web tool for phylogenetic inference of animal/palnt orthogroups under purposeful taxonomic sampling☆10Oct 21, 2026Updated last week
- vscode extension for working with SLiM☆12Dec 12, 2025Updated 10 months ago
- kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is…☆20Mar 30, 2020Updated 6 years ago
- An example repo for packaging cppyy bindings for a simple k-nearest neighbors implementation, based on https://github.com/jclay/cppyy-kne…☆12Apr 10, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- quickLD, a large-scale, long-range Linkage Disequilibrium analysis tool utilizing parallel CPU, GPU or heterogeneous computing.☆10Jun 10, 2022Updated 4 years ago
- starmie: plotting and inference for population structure models☆15Sep 20, 2018Updated 8 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 3 years ago
- ☆11Jul 23, 2024Updated 2 years ago
- C++ iterator that performs the cartesian product of many containers.☆12Jan 12, 2016Updated 10 years ago
- Diploid personal genome assembly and comprehensive variant detection based on linked-reads☆21Apr 28, 2023Updated 3 years ago
- Inference in Bayesian Networks with R☆12Feb 6, 2023Updated 3 years ago