clauswilke / proteinERLinks
Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"
☆15Updated 7 years ago
Alternatives and similar repositories for proteinER
Users that are interested in proteinER are comparing it to the libraries listed below
Sorting:
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆32Updated 6 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated last month
- gatk4 RNA variant calling pipeline☆58Updated 3 weeks ago
- A very simple BLAST filtering pipeline☆19Updated 11 years ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- Official repo for the standalone package of Coding Potential Calculator (CPC) 2.☆28Updated 4 years ago
- A python package and a set of shell commands to handle GTF files☆50Updated 3 weeks ago
- Basic Sequence Taxonomy Annotator☆44Updated last year
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- Maximum likelihood demultiplexing☆50Updated 10 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- Implementation of Krona to QIIME2☆16Updated last year
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated 2 months ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Updated 2 years ago
- visual analysis of your VCF files☆38Updated 3 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 10 months ago
- ☆84Updated 4 months ago
- An efficient way to guess the library type of your RNA-Seq data.☆33Updated 3 years ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆18Updated last year
- Convert genbank files to a swath of other formats☆24Updated this week
- visualising sequence similarity with Circos☆41Updated 6 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Updated 3 years ago
- ☆69Updated 2 years ago
- ☆28Updated 5 years ago