Alternatives and similar repositories for proteinER

Users that are interested in proteinER are comparing it to the libraries listed below

• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆32Updated 6 years ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆36Updated 2 years ago
• matdoering / openPrimeR
  An R Package for Multiplex PCR Primer Design and Analysis
  ☆28Updated 2 months ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• gao-lab / CPC2_standalone
  Official repo for the standalone package of Coding Potential Calculator (CPC) 2.
  ☆24Updated 4 years ago
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆17Updated 7 years ago
• evolbioinfo / booster
  ☆27Updated 5 years ago
• foerstner-lab / READemption
  A pipeline for the computational evaluation of RNA-Seq data
  ☆39Updated last year
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆39Updated 10 months ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆33Updated 2 years ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 6 years ago
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆35Updated last year
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆49Updated last year
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated last week
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆34Updated last year
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆70Updated 3 months ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆52Updated 2 years ago
• NCBI-Hackathons / MetagenomicAntibioticResistance
  NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes
  ☆22Updated 6 years ago
• Gabaldonlab / EvolClust
  Evolcust retrieves groups of genes that appear clustered together in groups of species
  ☆16Updated 2 years ago
• MHH-RCUG / Wochenende
  Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
  ☆37Updated 3 years ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last year
• refresh-bio / SPLASH
  ☆82Updated 2 weeks ago
• epi2me-labs / wf-amplicon
  ☆39Updated 5 months ago
• neherlab / pan-genome-visualization
  Visualization of the pan-genome output by panX
  ☆64Updated 3 months ago
• zhaoyanswill / RAPSearch2
  Reduced Alphabet based Protein similarity Search
  ☆40Updated 4 years ago
• BackofenLab / IntaRNA
  Efficient target prediction incorporating accessibility of interaction sites
  ☆48Updated last month
• fab-araujo / gofeat
  GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data
  ☆17Updated last year
• melbournebioinformatics / variant_calling_pipeline
  A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…
  ☆34Updated 11 years ago
• DrMicrobit / mira
  MIRA sequence assembler
  ☆28Updated 8 months ago