Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"
☆15Sep 10, 2018Updated 7 years ago
Alternatives and similar repositories for proteinER
Users that are interested in proteinER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 7 years ago
- programs and scripts for molecular structure analysis☆11Mar 26, 2026Updated last month
- ☆11Aug 10, 2023Updated 2 years ago
- studyforrest.org: Phase2 data (movie, eyetracking, retmapping, visual localizers) [BIDS]☆11Apr 13, 2023Updated 3 years ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆10Oct 31, 2023Updated 2 years ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- Repository for working on the Reproducibility project☆12Jul 27, 2016Updated 9 years ago
- Scaling and Load Balancing Shiny for R and Python Apps with Docker☆13Jun 1, 2024Updated last year
- ☆14Mar 2, 2026Updated 2 months ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Apr 13, 2026Updated 3 weeks ago
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 3 months ago
- AI4SocialGood Final Project☆14Sep 8, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A data analysis Python package for the PLUTO code☆15Apr 29, 2026Updated last week
- TSSr is an R/Bioconductor package for comprehensive analyses of transcription start site (TSS) data☆11May 1, 2026Updated last week
- ☆17Apr 3, 2026Updated last month
- starmie: plotting and inference for population structure models☆15Sep 20, 2018Updated 7 years ago
- quickLD, a large-scale, long-range Linkage Disequilibrium analysis tool utilizing parallel CPU, GPU or heterogeneous computing.☆10Jun 10, 2022Updated 3 years ago
- ☆14Apr 2, 2025Updated last year
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆15Apr 27, 2025Updated last year
- Statistical properties of polygenic risk scores☆19Oct 16, 2019Updated 6 years ago
- Predict protein local properties using sequence or profile information.☆23Nov 16, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Solvent Accessible Surface calculation software for biomolecules.☆19Apr 23, 2023Updated 3 years ago
- Documentation of the Snakemake-Profiles project.☆55Mar 15, 2022Updated 4 years ago
- This Python tool helps visualizing statistical significance on existing Matplotlib plots by adding significance bars and p-value labels b…☆20Feb 21, 2025Updated last year
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆11Oct 10, 2022Updated 3 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 2 years ago
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆20Nov 26, 2023Updated 2 years ago
- Najmanovich Research Group Toolkit for Elastic Networks☆12Apr 5, 2023Updated 3 years ago
- Analyses related to the Borzoi paper.☆26Dec 14, 2025Updated 4 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Absolute quantification package based on quantms.io☆16Sep 25, 2025Updated 7 months ago
- ☆20Jun 15, 2024Updated last year
- 🖨️ Print pictures with living micro-organisms!☆15Apr 9, 2025Updated last year
- pytorch dataloaders for single-cell perturbation data☆44Apr 24, 2026Updated 2 weeks ago
- Detecting natural selection from population-based genetic data☆29Mar 13, 2019Updated 7 years ago