malariagen / malariagen-data-python
Analyse MalariaGEN data from Python
☆17Updated this week
Alternatives and similar repositories for malariagen-data-python
Users that are interested in malariagen-data-python are comparing it to the libraries listed below
Sorting:
- Phylogenetics toolkit for the PyData Ecosystem☆11Updated last year
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆53Updated 9 years ago
- Snakemake workflow management system and CLI generation tool☆57Updated 2 weeks ago
- A set of tutorials for msprime and tskit.☆20Updated this week
- Partial reimplementation of bcftools for VCF Zarr☆13Updated this week
- deploy a snakemake pipeline directly from version control (under development)☆24Updated 2 months ago
- Tools for dealing with tree sequences coming to and from SLiM.☆27Updated last month
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Convert bioinformatics file formats to Zarr☆33Updated this week
- a minimal, scriptable genome browser for python☆51Updated 4 months ago
- genotype dimensionality reduction with a VAE☆43Updated 2 months ago
- A collection of documented examples using TreeTime☆21Updated 5 years ago
- ☆28Updated 4 years ago
- Fully automated generation of UCSC assembly hubs☆34Updated 7 months ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆49Updated last year
- Dynamic, adaptive sampling during nanopore sequencing☆32Updated last week
- Snakemake tutorial materials☆18Updated 5 years ago
- orthology assignment using phylogenetic and network analyses☆45Updated 2 months ago
- A python package for showing JBrowse views☆25Updated last year
- Interactive phylogenetic tree viewer/editor☆46Updated last year
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated 2 years ago
- Build and maintain multiple custom conda environments all in one place.☆38Updated 5 months ago
- Efficient calculation of phylogenetic distance matrices.☆47Updated 7 months ago
- Drawing functions for Demes demographic models☆20Updated 9 months ago
- gia: Genomic Interval Arithmetic☆62Updated 8 months ago
- Infer the age of ancestral nodes in a tree sequence.☆21Updated last month
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆37Updated last year
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 9 months ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆23Updated 5 months ago