Alternatives and similar repositories for malariagen-data-python

Users that are interested in malariagen-data-python are comparing it to the libraries listed below

• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆44Updated this week
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆74Updated last year
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆53Updated last year
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆122Updated 2 weeks ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆62Updated last month
• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆134Updated last year
• sjspielman / pyvolve
  Python library to simulate evolutionary sequence data
  ☆80Updated 4 years ago
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆116Updated 5 years ago
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆63Updated 3 months ago
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆24Updated 3 weeks ago
• snakemake / snakefmt
  The uncompromising Snakemake code formatter
  ☆182Updated 2 weeks ago
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆37Updated 2 weeks ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆81Updated last year
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆69Updated 3 months ago
• williamslab / ped-sim
  Pedigree simulator
  ☆29Updated last month
• seppinho / mutserve
  mtDNA Variant Caller
  ☆35Updated last year
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆68Updated 3 weeks ago
• biodatageeks / polars-bio
  Blazing-Fast Bioinformatic Operations on Python DataFrames
  ☆144Updated last week
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆47Updated this week
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated 2 years ago
• mbhall88 / taeper
  A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.
  ☆19Updated 7 years ago
• mrvollger / SmkTemplate
  A template repository for snakemake workflows.
  ☆42Updated 2 months ago
• broadinstitute / fiss
  FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine
  ☆34Updated 3 weeks ago
• WilsonSayresLab / BioinformaticsIntroduction
  ☆29Updated 5 years ago
• pyranges / pyranges_1.x
  Pyranges: a Python framework for ultrafast sequence interval operations
  ☆41Updated last week
• goeckslab / isoseq-browser
  ☆13Updated 8 years ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 7 years ago
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆55Updated 3 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆83Updated this week