Alternatives and similar repositories for malariagen-data-python

Users that are interested in malariagen-data-python are comparing it to the libraries listed below

• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆63Updated 2 months ago
• GATB / gatb-minia-pipeline
  GATB Minia assembly pipeline
  ☆31Updated 2 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆83Updated this week
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• Gaius-Augustus / MakeHub
  Fully automated generation of UCSC assembly hubs
  ☆35Updated last year
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆53Updated last year
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆47Updated 3 weeks ago
• mbhall88 / taeper
  A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.
  ☆19Updated 7 years ago
• gluonfield / nf-shard
  Nextflow runs monitoring and organisation UI
  ☆77Updated last year
• williamslab / ped-sim
  Pedigree simulator
  ☆28Updated last week
• kr-colab / locator
  deep learning prediction of geographic location from individual genome sequences
  ☆52Updated 11 months ago
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆117Updated 5 years ago
• mrvollger / SmkTemplate
  A template repository for snakemake workflows.
  ☆40Updated 2 weeks ago
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆38Updated last year
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆126Updated 7 months ago
• goldman-gp-ebi / BOSS-RUNS
  Dynamic, adaptive sampling during nanopore sequencing
  ☆37Updated 3 weeks ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆67Updated 2 weeks ago
• flexidot-bio / flexidot
  Highly customizable, ambiguity-aware dotplots for visual sequence analyses
  ☆94Updated last month
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆30Updated this week
• CDCgov / datasets-sars-cov-2
  Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)
  ☆58Updated 2 years ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated 2 years ago
• mdrasmus / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆57Updated 10 years ago
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆88Updated 7 years ago
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated last year
• mlafave / sam2pairwise
  sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.
  ☆44Updated 10 years ago
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆35Updated 2 weeks ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆118Updated last month
• nf-core / phaseimpute
  A bioinformatics pipeline to phase and impute genetic data
  ☆26Updated last week
• andrewkern / popGenMachineLearningExamples
  simple examples of using supervised machine learning for population genetics inference
  ☆39Updated 8 years ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆100Updated last year