malariagen / malariagen-data-pythonLinks
Analyse MalariaGEN data from Python
☆19Updated 2 weeks ago
Alternatives and similar repositories for malariagen-data-python
Users that are interested in malariagen-data-python are comparing it to the libraries listed below
Sorting:
- A template for standard compliant snakemake-workflows☆115Updated 3 weeks ago
- Convert bioinformatics file formats to Zarr☆39Updated 5 months ago
- Cookiecutter for snakemake slurm profile☆133Updated last year
- GATB Minia assembly pipeline☆31Updated 2 years ago
- Snakemake workflow management system and CLI generation tool☆62Updated last month
- Demonstrating best practices for bioinformatics command line tools☆116Updated 5 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- CoGe (Comparative Genomics) Platform☆46Updated 3 years ago
- The uncompromising Snakemake code formatter☆180Updated 3 weeks ago
- Python library to simulate evolutionary sequence data☆80Updated 3 years ago
- A C library for handling bigWig files☆81Updated 10 months ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- a minimal, scriptable genome browser for python☆52Updated 11 months ago
- deploy a snakemake pipeline directly from version control (under development)☆23Updated 2 weeks ago
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆93Updated last week
- Fully automated generation of UCSC assembly hubs☆35Updated last year
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated 3 weeks ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆23Updated last year
- Module for embedding igv.js in an IPython notebook☆80Updated 9 months ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Updated last month
- A template repository for snakemake workflows.☆40Updated 11 months ago
- Testing building mulled containers for multi-requirement tools.☆80Updated 2 weeks ago
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated 2 years ago
- QIIME 2 plugin supporting taxonomic classification☆21Updated 3 weeks ago
- resources for bioinformatics education☆94Updated 6 months ago
- PHAST☆77Updated last week
- Merging paired-end reads and removing adapters☆30Updated 5 years ago