Alternatives and similar repositories for GraphOmics

Users that are interested in GraphOmics are comparing it to the libraries listed below

• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆31Updated 2 years ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆16Updated last year
• ncsa / NEAT
  NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
  ☆53Updated last month
• AstraZeneca / detectIS
  A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data
  ☆12Updated 2 years ago
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆20Updated last year
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆25Updated last year
• lehtiolab / proteogenomics-analysis-workflow
  IPAW: a Nextflow workflow for proteogenomics
  ☆27Updated 9 months ago
• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆60Updated 2 years ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 3 years ago
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated last year
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 5 years ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆30Updated last month
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆68Updated last year
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆35Updated last week
• epaull / TieDIE
  Tied Diffusion for Subnetwork Discovery (TieDIE)
  ☆37Updated 3 years ago
• etirouthier / keras_dna
  ☆23Updated 4 years ago
• gatk-workflows / gatk4-jupyter-notebook-tutorials
  This repository contains Jupyter Notebooks containing GATK Best Practices Workflows
  ☆26Updated 5 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 8 months ago
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆60Updated last week
• DataBiosphere / terra-docker
  ☆29Updated this week
• mragsac / BISB-Bootcamp-2021
  FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program
  ☆19Updated 3 years ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆49Updated 5 years ago
• lichen-lab / MDeep
  ☆14Updated 5 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆25Updated last year
• stjudecloud / workflows
  Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  ☆36Updated this week
• widdowquinn / 2018-03-06-ibioic
  Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.
  ☆20Updated 7 years ago
• deweylab / MetaSRA-pipeline
  MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
  ☆43Updated last week
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆36Updated 7 years ago
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆45Updated last year
• cancerit / alleleCount
  Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…
  ☆44Updated 2 years ago