glasgowcompbio / GraphOmics
Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.
☆12Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for GraphOmics
- Universal RObust Peak Annotator☆15Updated 11 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆32Updated 3 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆43Updated last year
- Peak calling tool for CLIP-seq data☆14Updated 3 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 2 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆21Updated last month
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 3 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆60Updated last year
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 6 years ago
- A python package for showing JBrowse views☆23Updated 10 months ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆21Updated this week
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆61Updated 3 years ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆31Updated 4 months ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated 2 months ago
- Semi-parametric approach for the inference of gene regulatory networks from time series of expression data☆21Updated 8 months ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆20Updated this week
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆24Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- a minimal, scriptable genome browser for python☆48Updated 7 months ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆23Updated 2 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆19Updated 3 years ago
- Transcription Factor Enrichment Analysis☆34Updated 7 months ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆21Updated 3 years ago
- A simple pythonic interface to biomart.☆55Updated 4 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- A Python package for gene network analysis☆32Updated 2 years ago
- A genome browser in your Jupyter notebook☆26Updated 7 months ago
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆41Updated 11 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago