glasgowcompbio / GraphOmicsLinks
Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.
☆13Updated 2 months ago
Alternatives and similar repositories for GraphOmics
Users that are interested in GraphOmics are comparing it to the libraries listed below
Sorting:
- Universal RObust Peak Annotator☆16Updated last year
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆36Updated last week
- Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id☆45Updated last year
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆92Updated 6 months ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 11 months ago
- Python biomart API☆66Updated 2 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆64Updated 4 years ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆49Updated 2 months ago
- FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program☆19Updated 3 years ago
- predicting peptide and TCR interaction☆20Updated 4 years ago
- MyGene.info: A BioThings API for gene annotations☆127Updated last month
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆119Updated 3 years ago
- ☆41Updated 7 years ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆59Updated 2 months ago
- Package to Score Sequences using Rule Set 3☆11Updated last year
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆32Updated 3 months ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated last month
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆26Updated last year
- Analysis pipelines for genomic sequencing data☆68Updated last month
- Bioinformatics tools for Python☆25Updated 7 months ago
- GeneWalk identifies relevant gene functions for a biological context using network representation learning☆131Updated 11 months ago
- IPAW: a Nextflow workflow for proteogenomics☆28Updated 11 months ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated 2 months ago