giffordlabcvr / gluetools
An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
☆12Updated this week
Related projects ⓘ
Alternatives and complementary repositories for gluetools
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Updated 4 years ago
- Quality control for phylogenetic analyses☆13Updated last month
- Nanopore Real-Time Analysis Tool☆15Updated 2 months ago
- phylogenetic analyses informed by deep mutational scanning data☆14Updated 5 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated last year
- Pipelines to do MinION sequencing of Zika virus☆15Updated 5 years ago
- Automatically exported from code.google.com/p/densitree☆26Updated 2 months ago
- ☆12Updated 5 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆8Updated 6 years ago
- Nextflow Tower CLI tool☆43Updated last week
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆17Updated 4 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 5 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 6 months ago
- The Zika bioinformatics pipeline☆34Updated 4 years ago
- PanGenomePipeline☆15Updated 7 months ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Docker containers for bioinformatics with a small footprint☆23Updated last year
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- CAMITAX: Taxon labels for microbial genomes☆29Updated 11 months ago
- Synteny Mapping and Analysis Program☆26Updated last month
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆10Updated 4 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆10Updated 4 years ago
- Webin command line submission program.☆30Updated last month
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- ☆15Updated last year
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 8 months ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆29Updated 5 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago