giffordlabcvr / gluetools
An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
☆12Updated 2 months ago
Alternatives and similar repositories for gluetools:
Users that are interested in gluetools are comparing it to the libraries listed below
- Pipelines to do MinION sequencing of Zika virus☆15Updated 5 years ago
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Updated 5 years ago
- Northern Arizona SNP Pipeline☆19Updated 5 months ago
- SARs-CoV-2 Primer schemes☆15Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- PanGenomePipeline☆15Updated 11 months ago
- Surveillance of pathogens using population genomics and sequencing☆20Updated 2 weeks ago
- Webin command line submission program.☆34Updated this week
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 4 years ago
- Nanopore Real-Time Analysis Tool☆16Updated 6 months ago
- Lecture on viral phylodynamics☆12Updated 3 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 3 months ago
- blast, shmlast☆22Updated 4 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆18Updated 4 years ago
- ☆18Updated 9 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Updated 9 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 8 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 10 months ago
- Ebola virus surveillance☆16Updated 8 years ago
- ☆16Updated last year
- Assembly and intrahost / low-frequency variant calling for viral samples☆14Updated 5 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 3 months ago
- ☆17Updated 9 months ago
- phylogenetic analyses informed by deep mutational scanning data☆14Updated 9 months ago
- Talk to the NCBI EUtils☆22Updated 4 years ago
- ☆16Updated 6 years ago
- Quality control for phylogenetic analyses☆13Updated 3 weeks ago