tao-bioinfo / MiFishLinks
This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers
☆22Updated 3 months ago
Alternatives and similar repositories for MiFish
Users that are interested in MiFish are comparing it to the libraries listed below
Sorting:
- ☆21Updated 2 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated last month
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆104Updated 8 months ago
- SourceTracker2☆80Updated last year
- EasyCodeML: A visual tool for analysis of selection using CodeML☆83Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- REference Sequence annotation and CuRatIon Pipeline☆97Updated last month
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 5 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- Rapid and scalable correlation estimation for compositional data☆95Updated last year
- ☆78Updated last year
- Generating iToL annotations from Spreadsheet or CSV files☆106Updated 5 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆85Updated 3 months ago
- Course material for the metagenomics course☆46Updated 3 years ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆73Updated last year
- Using ggtree to build phylogenetic trees☆50Updated 11 months ago
- ☆39Updated 7 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆78Updated 2 years ago
- ☆84Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 10 months ago
- R implementation of the LEfSe method☆59Updated this week
- An R package designed for drawing gene arrow maps☆91Updated last month
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆31Updated 6 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆16Updated 5 months ago
- ☆50Updated 4 years ago
- ☆12Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago