tao-bioinfo / MiFishLinks
This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers
☆22Updated 2 months ago
Alternatives and similar repositories for MiFish
Users that are interested in MiFish are comparing it to the libraries listed below
Sorting:
- ☆21Updated 2 years ago
- Course material for the metagenomics course☆44Updated 3 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- SourceTracker2☆80Updated last year
- Rapid and scalable correlation estimation for compositional data☆93Updated last year
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated last week
- ☆78Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆106Updated 5 years ago
- Statistics and visualization for amplicon data☆71Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- ☆34Updated 4 years ago
- ☆84Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆83Updated 2 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 8 months ago
- ☆50Updated 4 years ago
- ☆28Updated last year
- EasyCodeML: A visual tool for analysis of selection using CodeML☆82Updated 2 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆31Updated 6 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- Statistical analysis for sparse high-throughput sequencing☆69Updated 9 months ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆90Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 2 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆46Updated last week
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- REference Sequence annotation and CuRatIon Pipeline☆97Updated last week