tao-bioinfo / MiFishLinks
This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers
☆21Updated this week
Alternatives and similar repositories for MiFish
Users that are interested in MiFish are comparing it to the libraries listed below
Sorting:
- ☆21Updated 2 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated 4 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- REference Sequence annotation and CuRatIon Pipeline☆99Updated last week
- EasyCodeML: A visual tool for analysis of selection using CodeML☆81Updated 2 years ago
- ☆76Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆103Updated 5 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆89Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆80Updated last week
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆55Updated last year
- Rapid and scalable correlation estimation for compositional data☆90Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- Making whole bacterial genome sequencing data analysis easy☆108Updated 2 months ago
- Sydney Phylogenetics Workshop☆63Updated last week
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆81Updated last month
- Best-fit model selection☆81Updated last year
- Documentation for Evolview☆29Updated 3 years ago
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 4 months ago
- SourceTracker2☆76Updated last year
- ☆41Updated 2 years ago
- ☆56Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 5 months ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated 10 months ago
- Using ggtree to build phylogenetic trees☆47Updated 8 months ago