PeptoneBench: evaluating protein ensembles across the order-disorder continuum
☆22Mar 24, 2026Updated 3 months ago
Alternatives and similar repositories for peptonebench
Users that are interested in peptonebench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for generating ensembles with IDPFold2☆21Updated this week
- PLaTITO is an open-source model for generative molecular dynamics of proteins.☆25May 6, 2026Updated 2 months ago
- ☆19Apr 13, 2026Updated 3 months ago
- Disordered protein ensemble prediction☆16Jun 11, 2026Updated last month
- Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"☆25May 3, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆143May 18, 2026Updated 2 months ago
- Integrating Molecular Simulation and Experimental Data☆27Sep 19, 2021Updated 4 years ago
- Structure prediction of alternative protein conformations☆85Feb 24, 2025Updated last year
- ☆15Oct 28, 2025Updated 8 months ago
- Biomolecular co-folding, binder filtering, and nanobody design☆81Jun 28, 2026Updated 3 weeks ago
- EnsembleFlex - Flexibility Analysis of Structure Ensembles☆19Sep 10, 2025Updated 10 months ago
- Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space☆34Jun 22, 2026Updated 3 weeks ago
- ☆15Mar 5, 2026Updated 4 months ago
- FINCHES (First-principle Interactions via CHEmical Specificity) - Python package for predicting chemically-specific molecular interaction…☆49May 20, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆19Apr 7, 2025Updated last year
- ☆34Jul 7, 2026Updated last week
- Code for "Calibrating Generative Models" by Henry Smith, Nathaniel Diamant, and Brian Trippe☆47Jul 2, 2026Updated 2 weeks ago
- A framework for training energy-based diffusion models for sampling and energy estimation.☆105May 10, 2026Updated 2 months ago
- Neurally-derived Potts models for protein design, inspired by dTERMen☆14Aug 23, 2022Updated 3 years ago
- ☆15Jun 25, 2026Updated 3 weeks ago
- ☆48Mar 7, 2026Updated 4 months ago
- Profluent-E1 family of Protein Encoder Models☆113Mar 11, 2026Updated 4 months ago
- Code for the paper Progressive Inference-Time Annealing of Diffusion Models for Sampling from Boltzmann Densities.☆37Jul 23, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Adding hydrogens to molecular models☆64Nov 24, 2025Updated 7 months ago
- ☆25Jun 10, 2026Updated last month
- Bridging Smoothed Molecular Dynamics and Score-Based Learning for Conformational Ensembles☆20May 16, 2026Updated 2 months ago
- Official implementation of From Supervision to Exploration: What Does Protein Language Model Learn During Reinforcement Learning?☆15Jun 19, 2026Updated last month
- Machine Learning tools for Coarse Graining☆32Updated this week
- Official repository for discrete Walk-Jump Sampling (dWJS)☆57Dec 17, 2023Updated 2 years ago
- ☆24Sep 5, 2025Updated 10 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆62Dec 16, 2025Updated 7 months ago
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆86Sep 12, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A universal ML model to predict molecular dynamics trajectories with long time steps☆55Jul 5, 2026Updated 2 weeks ago
- Linear-time prediction of proteome-scale microbial protein interactions☆40Jun 25, 2026Updated 3 weeks ago
- ☆54Apr 22, 2026Updated 2 months ago
- Benchmarking code accompanying the release of `bioemu`☆64Jul 8, 2026Updated last week
- Fast protein backbone generation with SE(3) flow matching.☆327Jul 19, 2024Updated 2 years ago
- Metadiffusion implemented in Boltz-2☆24Feb 23, 2026Updated 4 months ago
- Deep generative modeling of protein structural ensembles☆39May 27, 2026Updated last month