PeptoneBench: evaluating protein ensembles across the order-disorder continuum
☆22Mar 24, 2026Updated 5 months ago
Alternatives and similar repositories for peptonebench
Users that are interested in peptonebench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for generating ensembles with IDPFold2☆26Aug 7, 2026Updated last month
- PLaTITO is an open-source model for generative molecular dynamics of proteins.☆26May 6, 2026Updated 4 months ago
- ☆19Apr 13, 2026Updated 5 months ago
- Disordered protein ensemble prediction☆16Aug 31, 2026Updated 2 weeks ago
- ☆154May 18, 2026Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Integrating Molecular Simulation and Experimental Data☆27Sep 19, 2021Updated 5 years ago
- Structure prediction of alternative protein conformations☆86Feb 24, 2025Updated last year
- ☆15Oct 28, 2025Updated 10 months ago
- Biomolecular co-folding, binder filtering, and nanobody design☆91Jun 28, 2026Updated 2 months ago
- EnsembleFlex - Flexibility Analysis of Structure Ensembles☆19Sep 10, 2025Updated last year
- ☆15Mar 5, 2026Updated 6 months ago
- Convert coarse-grained protein structure to all-atom model☆62Jun 7, 2025Updated last year
- FINCHES (First-principle Interactions via CHEmical Specificity) - Python package for predicting chemically-specific molecular interaction…☆51Aug 24, 2026Updated 3 weeks ago
- Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space☆36Jun 22, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆20Apr 7, 2025Updated last year
- Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"☆25May 3, 2025Updated last year
- ☆46Jul 7, 2026Updated 2 months ago
- Code for "Calibrating Generative Models" by Henry Smith, Nathaniel Diamant, and Brian Trippe☆51Aug 8, 2026Updated last month
- A framework for training energy-based diffusion models for sampling and energy estimation.☆110May 10, 2026Updated 4 months ago
- Neurally-derived Potts models for protein design, inspired by dTERMen☆15Aug 23, 2022Updated 4 years ago
- ☆15Sep 4, 2026Updated 2 weeks ago
- ☆50Mar 7, 2026Updated 6 months ago
- Profluent-E1 family of Protein Encoder Models☆115Mar 11, 2026Updated 6 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Code for the paper Progressive Inference-Time Annealing of Diffusion Models for Sampling from Boltzmann Densities.☆38Sep 5, 2026Updated 2 weeks ago
- Adding hydrogens to molecular models☆64Nov 24, 2025Updated 9 months ago
- ☆25Jun 10, 2026Updated 3 months ago
- Bridging Smoothed Molecular Dynamics and Score-Based Learning for Conformational Ensembles☆21May 16, 2026Updated 4 months ago
- Official implementation of From Supervision to Exploration: What Does Protein Language Model Learn During Reinforcement Learning?☆15Jun 19, 2026Updated 3 months ago
- Machine Learning tools for Coarse Graining☆33Updated this week
- Official repository for discrete Walk-Jump Sampling (dWJS)☆58Dec 17, 2023Updated 2 years ago
- ☆24Sep 5, 2025Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆64Dec 16, 2025Updated 9 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A universal ML model to predict molecular dynamics trajectories with long time steps☆57Sep 9, 2026Updated last week
- ☆56Apr 22, 2026Updated 4 months ago
- Linear-time prediction of proteome-scale microbial protein interactions☆43Aug 10, 2026Updated last month
- Benchmarking code accompanying the release of `bioemu`☆65Aug 19, 2026Updated last month
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆90Sep 12, 2024Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆330Jul 19, 2024Updated 2 years ago
- Metadiffusion implemented in Boltz-2☆24Feb 23, 2026Updated 6 months ago