PeptoneBench: evaluating protein ensembles across the order-disorder continuum
☆22Mar 24, 2026Updated 7 months ago
Alternatives and similar repositories for peptonebench
Users that are interested in peptonebench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ensemble generator for multi-domain proteins☆15Feb 10, 2026Updated 8 months ago
- ☆19Apr 13, 2026Updated 6 months ago
- PLaTITO is an open-source model for generative molecular dynamics of proteins.☆28Oct 12, 2026Updated 2 weeks ago
- Code for generating ensembles with IDPFold2☆28Oct 1, 2026Updated 3 weeks ago
- Disordered protein ensemble prediction☆17Sep 20, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Skipping the replica exchange ladder with normalizing flows☆13Feb 7, 2024Updated 2 years ago
- ☆10Mar 26, 2025Updated last year
- Predicting water moelcule placements on protein surfaces using flow matching conditioned on learned protein structure embeddings.☆17Sep 17, 2026Updated last month
- The official repository for "Multi-Scale Protein Structure Modelling with Geometric Graph U-Nets"☆13Jan 7, 2026Updated 9 months ago
- ☆50Mar 7, 2026Updated 7 months ago
- ☆11Oct 7, 2025Updated last year
- ☆159May 18, 2026Updated 5 months ago
- Integrating Molecular Simulation and Experimental Data☆27Sep 19, 2021Updated 5 years ago
- Fast structural heterogeneity estimation with a protein language model☆15Jul 15, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Sep 30, 2026Updated 3 weeks ago
- Towards a protein binder candidate for every protein☆43Sep 1, 2026Updated last month
- Metadiffusion implemented in Boltz-2☆25Feb 23, 2026Updated 8 months ago
- Code for Autoregressive Boltzmann Generators. Paper Link: https://arxiv.org/abs/2606.27361☆27Jun 26, 2026Updated 4 months ago
- Structure prediction of alternative protein conformations☆86Feb 24, 2025Updated last year
- Biomolecular co-folding, binder filtering, and nanobody design☆93Jun 28, 2026Updated 4 months ago
- Research code for FKFlow Paper☆16Oct 16, 2026Updated last week
- EnsembleFlex - Flexibility Analysis of Structure Ensembles☆20Sep 10, 2025Updated last year
- Field-theoretic simulation and random phase approximation Python codes for polyampholyte phase-separation☆14Jul 23, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆16Mar 5, 2026Updated 7 months ago
- Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"☆25May 3, 2025Updated last year
- Convert coarse-grained protein structure to all-atom model☆63Jun 7, 2025Updated last year
- Tool repository for CAR-PNN☆14Oct 7, 2026Updated 3 weeks ago
- Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space☆36Oct 21, 2026Updated last week
- FINCHES (First-principle Interactions via CHEmical Specificity) - Python package for predicting chemically-specific molecular interaction…☆52Aug 24, 2026Updated 2 months ago
- ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers☆19Dec 3, 2024Updated last year
- ☆21Apr 7, 2025Updated last year
- ☆52Aug 24, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Code for "Calibrating Generative Models" by Henry Smith, Nathaniel Diamant, and Brian Trippe☆51Aug 8, 2026Updated 2 months ago
- Joint Protein-Ligand Embedding☆11Oct 3, 2025Updated last year
- Allosteric design of proteins using allosteric pathways, stability calculations, and normal mode analysis☆12Jan 11, 2026Updated 9 months ago
- ☆12Dec 6, 2025Updated 10 months ago
- A framework for training energy-based diffusion models for sampling and energy estimation.☆113May 10, 2026Updated 5 months ago
- HInt (Homologous Interactions)☆10Updated this week
- Framework for modified sampling from biomolecular generative models☆28Updated this week