EnsembleFlex - Flexibility Analysis of Structure Ensembles
☆19Sep 10, 2025Updated 11 months ago
Alternatives and similar repositories for EnsembleFlex
Users that are interested in EnsembleFlex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Jun 25, 2026Updated 2 months ago
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆12Jan 7, 2026Updated 7 months ago
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 3 months ago
- Histidine Protonation State Optimizer for setting up MD simulations based on semi-empirical QM resonance☆20Mar 6, 2026Updated 5 months ago
- ☆16Dec 10, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Protein binding site prediction with transformers☆18Jul 7, 2026Updated last month
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆84May 27, 2026Updated 3 months ago
- ☆33May 25, 2026Updated 3 months ago
- Code and notebook for our paper "Assessing interaction recovery of predicted protein-ligand poses"☆24Oct 2, 2024Updated last year
- MAGPIE☆17May 5, 2024Updated 2 years ago
- ☆15Jun 19, 2026Updated 2 months ago
- Open-source docking pipeline leveraging pairwise statistics☆15Jul 26, 2024Updated 2 years ago
- ☆11Mar 28, 2024Updated 2 years ago
- PeptoneBench: evaluating protein ensembles across the order-disorder continuum☆22Mar 24, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Rank binders by structure modeling☆17Apr 10, 2026Updated 4 months ago
- Code for generating ensembles with IDPFold2☆25Aug 7, 2026Updated 3 weeks ago
- ☆24May 8, 2026Updated 3 months ago
- EnzyDock: Protein–Ligand Docking of Multiple Reactive States along a Reaction Coordinate in Enzymes☆18Sep 5, 2024Updated last year
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆46May 22, 2025Updated last year
- Plugin for folding sequences directly in PyMOL☆29Aug 5, 2025Updated last year
- ☆19Jun 11, 2026Updated 2 months ago
- ☆20May 15, 2025Updated last year
- Random Acceleration Molecular Dynamics in GROMACS☆46Jul 19, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data☆41Jun 19, 2026Updated 2 months ago
- Repository for Ruff, King et al. Molecular grammars of predicted intrinsically disordered regions that span the human proteome☆19Dec 29, 2025Updated 8 months ago
- ☆54Nov 29, 2025Updated 9 months ago
- ☆15Mar 5, 2026Updated 5 months ago
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆76Aug 22, 2026Updated last week
- ☆23Oct 2, 2024Updated last year
- ☆27Apr 26, 2023Updated 3 years ago
- TPepPro: a deep learning model for predicting peptide-protein interactions☆15Jun 25, 2024Updated 2 years ago
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- From cryo-EM density map to atomic structure☆31Aug 17, 2025Updated last year
- This repository contains all containers that WARP uses.☆15Updated this week
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- ☆46Dec 30, 2025Updated 8 months ago
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- ☆18Aug 28, 2025Updated last year
- Toolkit for structure-based deep learning on RNA.☆46Aug 18, 2026Updated last week