☆32Jul 7, 2026Updated last week
Alternatives and similar repositories for decaf
Users that are interested in decaf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Biomolecular co-folding, binder filtering, and nanobody design☆80Jun 28, 2026Updated 2 weeks ago
- Genie 3 is a fast, all-atom SE(3)-equivariant diffusion model for protein design. It achieves state-of-the-art performance on uncondition…☆119May 10, 2026Updated 2 months ago
- Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (bui…☆391May 22, 2026Updated last month
- SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins☆80Jun 1, 2026Updated last month
- Code for the DISCO model: General Multimodal Protein Design Enables DNA-Encoding of Chemistry☆207May 13, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Official implementation of "FragFM: Hierarchical Framework for Efficient Molecule Generation via Fragment-Level Discrete Flow Matching" (…☆20Apr 24, 2026Updated 2 months ago
- ☆20Updated this week
- Feynman-Kac steering for controllable protein diffusion☆37Jan 14, 2026Updated 6 months ago
- Code for "Calibrating Generative Models" by Henry Smith, Nathaniel Diamant, and Brian Trippe☆46Jul 2, 2026Updated last week
- Enables using Boltz-1/1x to predict the structure of arbitrary covalent modifications / Non-Canonical Amino Acids. Covalent bonds are enf…☆22May 21, 2025Updated last year
- It's a package for evaluation of predicted poses, right?☆78Updated this week
- SE(3) diffusion models for generating CDR loops☆10Feb 6, 2024Updated 2 years ago
- Fine-tuning Boltz-1 for domain knowledge adaption☆27Apr 29, 2025Updated last year
- Benchmarking tools and analysis scripts for processing and evaluating structural data from the OpenBind EV-A71 2A dataset☆48May 21, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Model for predicting micro-millisecond motions from protein sequence and/or structure☆78Updated this week
- Fast protein backbone generation with SE(3) flow matching.☆327Jul 19, 2024Updated last year
- Constrained Diffusion with Trust Sampling☆12Dec 18, 2024Updated last year
- Latents-based conformational control in OpenFold3.☆73May 25, 2026Updated last month
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- ☆54Apr 22, 2026Updated 2 months ago
- BindCraft modified to make PyRosetta use and installation optional: no license needed☆147Updated this week
- Revised breaking of retrosynthetically interesting chemical substructures (r-BRICS) – a revised BRICS module based on rdKit that breaks r…☆18Mar 14, 2025Updated last year
- Official codebase for the paper "How to build a consistency model: Learning flow maps via self-distillation" (NeurIPS 2025).☆132Oct 8, 2025Updated 9 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Implementation of DEFT as a fork of RED-diff.☆15Dec 6, 2024Updated last year
- UBio-MolFM is a foundation model suite for molecular modeling, developed by the UBio-MolFM team.☆33Apr 13, 2026Updated 3 months ago
- ☆11Oct 2, 2023Updated 2 years ago
- AlphaFast: ultra-high-throughput AlphaFold3 inference with MMSeqs2-GPU☆162May 4, 2026Updated 2 months ago
- ☆19Dec 16, 2024Updated last year
- A drop-in replacement for Rosetta Relax☆29Jan 30, 2026Updated 5 months ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆293Dec 10, 2024Updated last year
- Boltz-1/2 with restraint-guided inference (Ligand Conformer Restraint and Distance Restraint)☆19Updated this week
- composite-objective protein design☆348Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆91Jul 10, 2025Updated last year
- A deep-learning-based multiple toolkits (DeTool) approach that uses the inputs of enzymes and substrates for biocatalystic tasks.☆14Nov 24, 2023Updated 2 years ago
- Official implementation of Sharpness-Aware Flow Matching☆16Jul 1, 2026Updated last week
- Propose CDR single-point mutations that rescue antibody expression without disrupting antigen binding, using bound vs. unbound ProteinMPN…☆15May 26, 2026Updated last month
- ☆40Mar 30, 2025Updated last year
- Reproduce analyses and baselines from the State paper☆16Jun 29, 2026Updated 2 weeks ago
- PLM based active learning model for protein engineering☆86Aug 6, 2024Updated last year