Alternatives and similar repositories for docker-galaxy

Users that are interested in docker-galaxy are comparing it to the libraries listed below

• galaxyproject / training-material
  A collection of Galaxy-related training material
  ☆343Updated this week
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆151Updated 9 months ago
• galaxyproject / planemo
  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…
  ☆95Updated last week
• galaxyproject / bioblend
  A Python library for interacting with the Galaxy API
  ☆93Updated 3 weeks ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• galaxyproject / admin-training
  Galaxy Admin Training
  ☆60Updated last week
• nextflow-io / patterns
  A curated collection of Nextflow implementation patterns
  ☆365Updated last year
• wurmlab / sequenceserver
  Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
  ☆289Updated this week
• The-Sequence-Ontology / Specifications
  GFF and GVF specification documents
  ☆216Updated last year
• gatk-workflows / gatk4-data-processing
  Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
  ☆158Updated 3 years ago
• assemblerflow / flowcraft
  FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.
  ☆245Updated 2 months ago
• arq5x / gemini
  a lightweight db framework for exploring genetic variation.
  ☆323Updated 5 years ago
• joiningdata / lollipops
  Lollipop-style mutation diagrams for annotating genetic variations.
  ☆195Updated last year
• genome / bam-readcount
  Count bases in BAM/CRAM files
  ☆319Updated 3 years ago
• pcingola / SnpEff
  ☆293Updated last month
• bedops / bedops
  BEDOPS: high-performance genomic feature operations
  ☆352Updated 6 months ago
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆128Updated 5 years ago
• RealTimeGenomics / rtg-tools
  RTG Tools: Utilities for accurate VCF comparison and manipulation
  ☆327Updated 5 months ago
• nf-core / tools
  Python package with helper tools for the nf-core community.
  ☆275Updated last week
• broadinstitute / seqr
  web-based analysis tool for rare disease genomics
  ☆195Updated last week
• OpenGene / AfterQC
  Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
  ☆212Updated 5 years ago
• broadinstitute / viral-ngs
  [THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble …
  ☆195Updated last year
• daler / pybedtools
  Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
  ☆326Updated 7 months ago
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated 2 weeks ago
• Ensembl / ensembl-rest
  Language agnostic RESTful data access to Ensembl data over HTTP
  ☆149Updated last month
• broadgsa / gatk
  Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…
  ☆295Updated 7 years ago
• arq5x / poretools
  a toolkit for working with Oxford nanopore data
  ☆245Updated 2 years ago
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆479Updated last month
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆117Updated 10 months ago
• konradjk / loftee
  ☆183Updated 2 years ago