Alternatives and similar repositories for docker-galaxy:

Users that are interested in docker-galaxy are comparing it to the libraries listed below

• galaxyproject / planemo
  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…
  ☆91Updated this week
• galaxyproject / bioblend
  A Python library for interacting with the Galaxy API
  ☆85Updated 2 months ago
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆147Updated last year
• nextflow-io / patterns
  A curated collection of Nextflow implementation patterns
  ☆339Updated last year
• joiningdata / lollipops
  Lollipop-style mutation diagrams for annotating genetic variations.
  ☆187Updated 4 months ago
• assemblerflow / flowcraft
  FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.
  ☆243Updated 4 years ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• arq5x / poretools
  a toolkit for working with Oxford nanopore data
  ☆243Updated last year
• dasmoth / dalliance
  Interactive web-based genome browser.
  ☆227Updated 5 years ago
• bgruening / galaxytools
  Galaxy Tool wrappers
  ☆116Updated this week
• galaxyproject / training-material
  A collection of Galaxy-related training material
  ☆316Updated this week
• pcingola / SnpEff
  ☆261Updated last month
• RealTimeGenomics / rtg-tools
  RTG Tools: Utilities for accurate VCF comparison and manipulation
  ☆306Updated 7 months ago
• genome / bam-readcount
  Count bases in BAM/CRAM files
  ☆310Updated 2 years ago
• The-Sequence-Ontology / Specifications
  GFF and GVF specification documents
  ☆211Updated 7 months ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆105Updated last month
• dpryan79 / ChromosomeMappings
  This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
  ☆237Updated 2 years ago
• ssadedin / bpipe
  Bpipe - a tool for running and managing bioinformatics pipelines
  ☆233Updated 2 weeks ago
• AliView / AliView
  Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:
  ☆120Updated 3 months ago
• lindenb / jvarkit
  Java utilities for Bioinformatics
  ☆490Updated this week
• OpenGene / AfterQC
  Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
  ☆208Updated 4 years ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆319Updated 2 months ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆390Updated 3 weeks ago
• bedops / bedops
  BEDOPS: high-performance genomic feature operations
  ☆307Updated 11 months ago
• nf-core / methylseq
  Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
  ☆154Updated 3 weeks ago
• hall-lab / speedseq
  A flexible framework for rapid genome analysis and interpretation
  ☆316Updated 2 years ago
• daler / gffutils
  GFF and GTF file manipulation and interconversion
  ☆292Updated 9 months ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆389Updated this week
• DaehwanKimLab / tophat
  Spliced read mapper for RNA-Seq
  ☆92Updated last year
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆535Updated 6 months ago