Alternatives and similar repositories for docker-galaxy

Users that are interested in docker-galaxy are comparing it to the libraries listed below

• galaxyproject / planemo
  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…
  ☆93Updated last week
• galaxyproject / admin-training
  Galaxy Admin Training
  ☆61Updated 5 months ago
• joiningdata / lollipops
  Lollipop-style mutation diagrams for annotating genetic variations.
  ☆189Updated 7 months ago
• nextflow-io / patterns
  A curated collection of Nextflow implementation patterns
  ☆356Updated last year
• galaxyproject / training-material
  A collection of Galaxy-related training material
  ☆330Updated this week
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆107Updated this week
• RealTimeGenomics / rtg-tools
  RTG Tools: Utilities for accurate VCF comparison and manipulation
  ☆317Updated 11 months ago
• The-Sequence-Ontology / Specifications
  GFF and GVF specification documents
  ☆213Updated 10 months ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆150Updated 3 months ago
• MaayanLab / biojupies
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
  ☆114Updated 6 months ago
• SciLifeLab / Sarek
  Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
  ☆133Updated 5 years ago
• genome / bam-readcount
  Count bases in BAM/CRAM files
  ☆315Updated 3 years ago
• arq5x / poretools
  a toolkit for working with Oxford nanopore data
  ☆243Updated 2 years ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆395Updated this week
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆114Updated 5 months ago
• common-workflow-library / bio-cwl-tools
  CWL CommandLineTool descriptions for biology/life-sciences related applications
  ☆78Updated last month
• snakemake / snakemake-wrappers
  This is the development home of the Snakemake wrapper repository, see
  ☆225Updated last week
• dpryan79 / ChromosomeMappings
  This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
  ☆241Updated 2 years ago
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆101Updated last week
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆541Updated 10 months ago
• brentp / vcfanno
  annotate a VCF with other VCFs/BEDs/tabixed files
  ☆375Updated last year
• nf-core / methylseq
  Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
  ☆166Updated 2 weeks ago
• hall-lab / speedseq
  A flexible framework for rapid genome analysis and interpretation
  ☆316Updated 2 years ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆468Updated 2 months ago
• assemblerflow / flowcraft
  FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.
  ☆244Updated 5 years ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆87Updated 2 weeks ago
• pezmaster31 / bamtools
  C++ API & command-line toolkit for working with BAM data
  ☆424Updated 10 months ago
• nextflow-io / training
  Nextflow training material
  ☆164Updated this week
• nf-core / tools
  Python package with helper tools for the nf-core community.
  ☆256Updated this week