☆14Oct 14, 2026Updated this week
Alternatives and similar repositories for piscem-rs
Users that are interested in piscem-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pure rust reimplementation of rapid-gzip by Maximilian Knespel and Holger Brunst☆21Aug 10, 2026Updated 2 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 7 months ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- ☆15Sep 22, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago
- ☆19Aug 25, 2026Updated last month
- Annotation-independent molecular-evidence archives for single-cell RNA-seq☆19Oct 8, 2026Updated last week
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 3 months ago
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- a rust library for high throughput binary encoding of genomic sequences☆12Aug 26, 2026Updated last month
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- Simple interval class for fast fasta access☆10Jun 18, 2012Updated 14 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Mapping sequencing data to De Bruijn graphs, fast☆38Aug 31, 2026Updated last month
- Enhancing Gene Set Overrepresentation Analysis with Large Language Models☆11Mar 17, 2025Updated last year
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated last month
- Concurrency algorithms☆13Apr 7, 2025Updated last year
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆50Sep 30, 2026Updated 2 weeks ago
- A rust implementation of STAR☆90Updated this week
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 4 years ago
- ☆21Dec 26, 2025Updated 9 months ago
- Compute hash digests for DNA sequences in a FASTA file☆12May 31, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆24Apr 2, 2021Updated 5 years ago
- High-performance UMI tools for NGS data analysis☆58Updated this week
- Simultaneous exploration of thousands of long-read transcriptomes by read-level indexing☆46Oct 11, 2026Updated last week
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- kmer-counter☆19Oct 14, 2026Updated last week
- ☆15Nov 30, 2023Updated 2 years ago
- bedpull - Pull the query sequence from bam or fasta references using a bed file☆16Sep 24, 2026Updated 3 weeks ago
- A Rust implementation of SSHash☆20Updated this week
- CLI tool to verify workflow reproducibility☆17Jan 29, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- Fast interval intersection library☆44Updated this week
- BED QC tool (in the making)☆18Aug 19, 2022Updated 4 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- ☆19Jul 15, 2026Updated 3 months ago
- Tearing through FASTA/Q sequences☆41Jul 9, 2026Updated 3 months ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year